Os01g0578200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, MYND-type domain containing protein.
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Os01g0578200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, MYND-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.38 | 0.353 | 5.83 | 5.82 | 0.0178 | 366 | -0.428 | 758 | 0.0213 | 22.8 | 19.88 | 11 | 8 | 8.88 |
| 84.39 | 0.431 | 3.1 | 0.0437 | 0.0363 | 0.755 | 0.623 | -- | -0.00833 | 7.9 | 19.88 | 11 | 8 | 8.88 |
| 56.62 | 0.35 | 5.78 | 5.84 | 0.0308 | 367 | -- | 759 | 0.0211 | 6.13 | 19.79 | 12 | 7.96 | 8.87 |
| 81.39 | 0.423 | 3.09 | 0.128 | 0.052 | 1.13 | -- | -- | 0.02 | 2.56 | 23.52 | 2 | 6.35 | 9.65 |
| 56.25 | 0.349 | 5.78 | 5.74 | -- | 367 | -- | 759 | 0.0266 | -- | 19.78 | 12 | 7.9 | 9.04 |
| 86.02 | 0.435 | 3.1 | -0.00311 | 0.0438 | -- | 0.584 | -- | -0.0212 | 7.28 | -- | -- | -- | -- |
| 86.93 | 0.437 | 3.1 | 0.0098 | 0.045 | -- | -- | -- | -0.0221 | 8.01 | -- | -- | -- | -- |
| 81.55 | 0.422 | 3.09 | 0.127 | -- | 1.1 | -- | -- | 0.0205 | -- | 23.56 | 2 | 6.62 | 10.4 |
| 81.79 | 0.424 | 3.09 | -- | 0.0521 | 1.05 | -- | -- | 0.00434 | 2.74 | 23.59 | 2 | 7.09 | 10.2 |
| 87.04 | 0.436 | 3.1 | 0.0102 | -- | -- | -- | -- | -0.0216 | -- | -- | -- | -- | -- |
| 86.93 | 0.436 | 3.1 | -- | 0.0451 | -- | -- | -- | -0.0232 | 8 | -- | -- | -- | -- |
| 81.95 | 0.423 | 3.09 | -- | -- | 1.03 | -- | -- | 0.00441 | -- | 23.56 | 2 | 6.62 | 10.4 |
| 87.04 | 0.435 | 3.1 | -- | -- | -- | -- | -- | -0.0227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.17 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 9 |
| 3 | 65.07 | radiation | 1 | 90 | < th | dose independent | rect. | 14 | 1 |
| 4 | 65.07 | radiation | 1 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 5 | 65.13 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 6 | 65.19 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 8 | 65.41 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 1 |
| 15 | 65.41 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 57 | 67.39 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 4 |
| 63 | 68.16 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 9 |
| 65 | 68.29 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 9 |
| 141 | 72.65 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 4 |
| 142 | 72.66 | wind | 5 | 10 | > th | dose independent | rect. | 8 | 1 |
| 144 | 72.66 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 148 | 72.68 | radiation | 1 | 90 | < th | dose dependent | rect. | 9 | 7 |
| 150 | 72.69 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 2 |
| 159 | 72.69 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 276 | 74.68 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 279 | 74.86 | humidity | 80 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 287 | 75.06 | humidity | 80 | 10 | > th | dose independent | rect. | 15 | 1 |
| 308 | 75.28 | humidity | 80 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 350 | 76.05 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 373 | 76.26 | wind | 3 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 374 | 76.27 | temperature | 20 | 270 | < th | dose independent | rect. | 12 | 1 |
| 392 | 76.63 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 15 | 1 |
| 406 | 76.86 | radiation | 1 | 10 | < th | dose independent | rect. | 16 | 1 |
| 520 | 78.27 | humidity | 80 | 10 | > th | dose dependent | rect. | 12 | 5 |
| 522 | 78.28 | wind | 5 | 10 | > th | dose independent | rect. | 1 | 8 |
| 528 | 78.34 | wind | 3 | 90 | > th | dose independent | rect. | 6 | 1 |
| 541 | 78.44 | humidity | 80 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 544 | 78.46 | humidity | 80 | 270 | < th | dose independent | rect. | 4 | 3 |
| 560 | 78.75 | wind | 5 | 10 | < th | dose independent | rect. | 16 | 1 |
| 593 | 79.14 | temperature | 20 | 90 | < th | dose independent | sin | 23 | NA |
| 601 | 79.20 | wind | 5 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 605 | 79.27 | wind | 5 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 622 | 79.49 | radiation | 1 | 30 | < th | dose independent | rect. | 11 | 6 |
| 644 | 79.70 | temperature | 20 | 90 | > th | dose independent | sin | 23 | NA |
| 684 | 79.84 | radiation | 1 | 30 | < th | dose independent | rect. | 6 | 11 |
| 693 | 79.89 | wind | 3 | 30 | > th | dose independent | rect. | 15 | 1 |
| 790 | 80.39 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 10 |
| 796 | 80.43 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 12 |
| 814 | 80.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 3 |
| 839 | 80.64 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 8 |
| 854 | 80.72 | radiation | 20 | 30 | < th | dose independent | rect. | 15 | 1 |
| 860 | 80.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 947 | 81.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 2 | 14 |
| 997 | 81.21 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 1 |