Os01g0576000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os01g0576000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.67 | 0.392 | 9.24 | -0.453 | 0.0209 | -0.373 | 1.01 | 0.62 | -0.199 | 19.5 | 15.23 | 10 | -- | -- |
| 70.19 | 0.39 | 9.24 | -0.445 | 0.0205 | -0.388 | 0.941 | -- | -0.197 | 18.5 | 14.98 | 9 | -- | -- |
| 72.23 | 0.396 | 9.24 | -0.472 | 0.0252 | -0.384 | -- | 0.278 | -0.197 | 18 | 15.93 | 9 | -- | -- |
| 72.33 | 0.396 | 9.23 | -0.453 | 0.0539 | -0.433 | -- | -- | -0.194 | 14.5 | 13.86 | 9 | -- | -- |
| 72.27 | 0.396 | 9.23 | -0.465 | -- | -0.391 | -- | 0.274 | -0.196 | -- | 15.31 | 9 | -- | -- |
| 74.24 | 0.404 | 9.23 | -0.434 | 0.0489 | -- | 0.927 | -- | -0.19 | 18.9 | -- | -- | -- | -- |
| 75.52 | 0.407 | 9.23 | -0.456 | 0.131 | -- | -- | -- | -0.191 | 23.6 | -- | -- | -- | -- |
| 72.43 | 0.396 | 9.23 | -0.455 | -- | -0.396 | -- | -- | -0.195 | -- | 15.08 | 9 | -- | -- |
| 77.67 | 0.41 | 9.22 | -- | 0.0759 | -0.437 | -- | -- | -0.149 | 14.6 | 10 | 9 | -- | -- |
| 76.6 | 0.409 | 9.23 | -0.452 | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
| 80.99 | 0.421 | 9.22 | -- | 0.126 | -- | -- | -- | -0.14 | 23.4 | -- | -- | -- | -- |
| 77.9 | 0.411 | 9.22 | -- | -- | -0.393 | -- | -- | -0.144 | -- | 14.92 | 8 | -- | -- |
| 81.99 | 0.423 | 9.22 | -- | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.57 | temperature | 25.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 7 | 64.18 | temperature | 25.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 18 | 64.60 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 9 |
| 20 | 64.65 | temperature | 25.0 | 270 | < th | dose independent | sin | 14 | NA |
| 23 | 64.69 | temperature | 25.0 | 270 | > th | dose independent | sin | 14 | NA |
| 31 | 64.87 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 10 |
| 82 | 65.70 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 8 |
| 112 | 65.97 | temperature | 25.0 | 90 | > th | dose independent | rect. | 20 | 7 |
| 137 | 66.26 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 10 |
| 143 | 66.28 | temperature | 25.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 241 | 67.01 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 10 |
| 277 | 67.18 | radiation | 30.0 | 10 | < th | dose independent | rect. | 23 | 12 |
| 335 | 67.44 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 362 | 67.54 | wind | 1.0 | 30 | > th | dose independent | rect. | 1 | 8 |
| 369 | 67.56 | temperature | 20.0 | 270 | > th | dose dependent | sin | 15 | NA |
| 399 | 67.68 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 428 | 67.84 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 440 | 67.89 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 441 | 67.90 | temperature | 30.0 | 720 | > th | dose independent | rect. | 13 | 1 |
| 464 | 68.00 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 7 |
| 466 | 68.00 | temperature | 20.0 | 10 | > th | dose dependent | sin | 13 | NA |
| 471 | 68.01 | wind | 1.0 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 477 | 68.03 | radiation | 40.0 | 10 | < th | dose independent | rect. | 23 | 21 |
| 479 | 68.04 | temperature | 30.0 | 720 | < th | dose independent | rect. | 21 | 17 |
| 485 | 68.06 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 11 | 1 |
| 489 | 68.08 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 1 |
| 492 | 68.08 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 496 | 68.08 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 502 | 68.11 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 10 |
| 504 | 68.12 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 506 | 68.13 | wind | 5.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 512 | 68.14 | radiation | 30.0 | 30 | < th | dose independent | rect. | 23 | 10 |
| 513 | 68.14 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 516 | 68.15 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 517 | 68.15 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 13 |
| 519 | 68.17 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 10 |
| 522 | 68.17 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 24 | 10 |
| 523 | 68.17 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 526 | 68.17 | wind | 9.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 532 | 68.19 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 1 |
| 539 | 68.21 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 14 |
| 546 | 68.24 | radiation | 20.0 | 10 | < th | dose independent | rect. | 23 | 21 |
| 554 | 68.26 | radiation | 40.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 558 | 68.27 | radiation | 40.0 | 720 | < th | dose independent | rect. | 19 | 14 |
| 560 | 68.27 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 562 | 68.28 | humidity | 80.0 | 30 | < th | dose independent | rect. | 11 | 1 |
| 563 | 68.28 | wind | 9.0 | 30 | < th | dose independent | rect. | 23 | 10 |
| 564 | 68.28 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 10 |
| 565 | 68.28 | temperature | 30.0 | 30 | < th | dose independent | rect. | 23 | 10 |
| 566 | 68.28 | humidity | 50.0 | 30 | > th | dose independent | rect. | 23 | 10 |
| 568 | 68.28 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 23 | 10 |
| 569 | 68.28 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 14 |
| 571 | 68.28 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 14 |
| 586 | 68.31 | wind | 3.0 | 720 | < th | dose independent | rect. | 21 | 1 |
| 593 | 68.32 | wind | 5.0 | 30 | < th | dose independent | rect. | 23 | 10 |
| 599 | 68.33 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 607 | 68.35 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 611 | 68.36 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 614 | 68.37 | radiation | 20.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 615 | 68.37 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 628 | 68.38 | wind | 1.0 | 30 | > th | dose independent | rect. | 3 | 6 |
| 633 | 68.39 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 20 | 16 |
| 650 | 68.40 | radiation | 20.0 | 720 | > th | dose independent | rect. | 11 | 1 |
| 656 | 68.41 | humidity | 90.0 | 30 | < th | dose independent | rect. | 9 | 16 |
| 663 | 68.42 | wind | 3.0 | 720 | > th | dose independent | rect. | 11 | 1 |
| 666 | 68.42 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 667 | 68.42 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 11 | 12 |
| 674 | 68.44 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 678 | 68.45 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 12 |
| 681 | 68.45 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 15 | 8 |
| 683 | 68.46 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 14 |
| 687 | 68.46 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 14 |
| 698 | 68.48 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 9 | 3 |
| 700 | 68.49 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 3 |
| 701 | 68.49 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 726 | 68.52 | radiation | 10.0 | 30 | > th | dose independent | rect. | 9 | 3 |
| 735 | 68.52 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 744 | 68.54 | temperature | 30.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 759 | 68.56 | humidity | 90.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 762 | 68.56 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 5 |
| 765 | 68.56 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 21 |
| 772 | 68.58 | humidity | 80.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 773 | 68.58 | temperature | 30.0 | 720 | < th | dose independent | rect. | 23 | 15 |
| 778 | 68.58 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 20 | 16 |
| 791 | 68.60 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 24 | 21 |
| 796 | 68.61 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 1 |
| 797 | 68.61 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 2 |
| 821 | 68.62 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 24 | 1 |
| 834 | 68.63 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 23 | 12 |
| 839 | 68.64 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 840 | 68.64 | wind | 1.0 | 30 | > th | dose independent | rect. | 1 | 10 |
| 847 | 68.64 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 875 | 68.68 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 14 |
| 889 | 68.70 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 891 | 68.70 | humidity | 90.0 | 30 | < th | dose independent | rect. | 11 | 14 |
| 899 | 68.71 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 12 |
| 930 | 68.74 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 23 | 10 |
| 941 | 68.74 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 23 | 10 |
| 944 | 68.74 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 950 | 68.75 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 958 | 68.76 | temperature | 30.0 | 10 | < th | dose independent | rect. | 23 | 12 |
| 964 | 68.76 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 12 |
| 978 | 68.78 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 1 |
| 984 | 68.79 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 988 | 68.79 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 999 | 68.81 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 23 | 10 |