Os01g0572300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os01g0572300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.62 | 0.539 | 9.52 | 2.41 | 0.953 | 1.23 | 0.756 | -1.87 | 1.15 | 23.1 | 20.5 | 2713 | -- | -- |
| 136.49 | 0.544 | 9.44 | 2.76 | 0.895 | 1.65 | 0.729 | -- | 1.26 | 23.1 | 19.79 | 2427 | -- | -- |
| 133.99 | 0.539 | 9.52 | 2.39 | 0.952 | 1.23 | -- | -1.82 | 1.14 | 23.1 | 20.5 | 2750 | -- | -- |
| 138.28 | 0.548 | 9.44 | 2.76 | 0.899 | 1.67 | -- | -- | 1.28 | 23.3 | 19.4 | 2317 | -- | -- |
| 184.81 | 0.633 | 9.49 | 2.4 | -- | 1.51 | -- | -1.58 | 1.13 | -- | 20.52 | 2350 | -- | -- |
| 187.81 | 0.642 | 9.36 | 3.58 | 1.01 | -- | 0.637 | -- | 1.64 | 23.3 | -- | -- | -- | -- |
| 189.53 | 0.645 | 9.36 | 3.56 | 1 | -- | -- | -- | 1.63 | 23.4 | -- | -- | -- | -- |
| 187.29 | 0.637 | 9.43 | 2.68 | -- | 1.88 | -- | -- | 1.25 | -- | 19.37 | 2335 | -- | -- |
| 160 | 0.589 | 9.59 | -- | 0.972 | 3.24 | -- | -- | 0.64 | 23.3 | 16.42 | 47520 | -- | -- |
| 252.69 | 0.743 | 9.34 | 3.58 | -- | -- | -- | -- | 1.64 | -- | -- | -- | -- | -- |
| 522.92 | 1.07 | 9.45 | -- | 1.04 | -- | -- | -- | 1.24 | 23.6 | -- | -- | -- | -- |
| 219.37 | 0.69 | 9.57 | -- | -- | 3.25 | -- | -- | 0.62 | -- | 16.63 | 47520 | -- | -- |
| 591.25 | 1.13 | 9.43 | -- | -- | -- | -- | -- | 1.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.57 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 2 | 130.79 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 3 | 131.22 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 4 | 131.33 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 6 | 131.73 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 7 | 131.82 | temperature | 20.0 | 720 | > th | dose independent | sin | 10 | NA |
| 10 | 131.91 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 14 | 132.02 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 16 | 132.03 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 17 | 132.04 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 10 |
| 20 | 132.10 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 38 | 132.44 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 15 |
| 50 | 132.59 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 92 | 133.09 | temperature | 20.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 93 | 133.10 | temperature | 20.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 108 | 133.28 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 110 | 133.32 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 112 | 133.32 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 116 | 133.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 120 | 133.38 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 137 | 133.50 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 162 | 133.76 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 168 | 133.84 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 182 | 133.92 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 183 | 133.92 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 189 | 133.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 203 | 134.07 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 206 | 134.09 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 208 | 134.11 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 227 | 134.25 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 228 | 134.25 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 240 | 134.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 247 | 134.37 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 258 | 134.43 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 366 | 134.91 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 372 | 134.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 408 | 135.07 | temperature | 20.0 | 720 | < th | dose independent | sin | 9 | NA |
| 415 | 135.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 6 |
| 427 | 135.11 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 432 | 135.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 433 | 135.13 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 436 | 135.13 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 526 | 135.38 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 543 | 135.44 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 580 | 135.55 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 706 | 135.85 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 759 | 135.94 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 770 | 135.95 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 809 | 136.05 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 834 | 136.08 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 835 | 136.08 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 878 | 136.17 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 5 |