Os01g0572200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0572200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 583.08 | 1.13 | 7.51 | 3.26 | 0.664 | 3.65 | 0.884 | -11 | -1.2 | 5.86 | 29.6 | 4280 | -- | -- |
| 611.19 | 1.15 | 7.55 | 2.08 | 0.91 | 2.88 | 1.19 | -- | -0.448 | 5.19 | 24 | 4214 | -- | -- |
| 584.71 | 1.13 | 7.5 | 3.27 | 0.669 | 3.6 | -- | -10.6 | -1.12 | 5.62 | 29.52 | 4277 | -- | -- |
| 600.17 | 1.14 | 7.56 | 1.58 | 0.675 | 2.56 | -- | -- | -0.548 | 4.72 | 24.19 | 3709 | -- | -- |
| 604.73 | 1.15 | 7.48 | 3.44 | -- | 3.56 | -- | -10.7 | -0.975 | -- | 29.49 | 4389 | -- | -- |
| 786.78 | 1.31 | 7.72 | 0.47 | 0.656 | -- | 0.796 | -- | -1.29 | 6.85 | -- | -- | -- | -- |
| 788.34 | 1.31 | 7.72 | 0.483 | 0.661 | -- | -- | -- | -1.29 | 6.67 | -- | -- | -- | -- |
| 618.55 | 1.16 | 7.55 | 1.58 | -- | 2.53 | -- | -- | -0.496 | -- | 24.2 | 3479 | -- | -- |
| 654.42 | 1.19 | 7.62 | -- | 0.635 | 2.03 | -- | -- | -0.834 | 5.42 | 24.17 | 3553 | -- | -- |
| 811.12 | 1.33 | 7.73 | 0.498 | -- | -- | -- | -- | -1.27 | -- | -- | -- | -- | -- |
| 794.49 | 1.32 | 7.73 | -- | 0.667 | -- | -- | -- | -1.34 | 6.62 | -- | -- | -- | -- |
| 674.39 | 1.21 | 7.62 | -- | -- | 2.07 | -- | -- | -0.788 | -- | 24.3 | 3486 | -- | -- |
| 817.67 | 1.33 | 7.75 | -- | -- | -- | -- | -- | -1.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 551.38 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 552.43 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 3 | 553.07 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 7 | 562.27 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 8 | 563.46 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 10 | 565.28 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 14 | 569.34 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 19 | 570.84 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 28 | 574.42 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 32 | 575.99 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 41 | 578.39 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 43 | 578.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 46 | 579.16 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 50 | 579.32 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 6 |
| 56 | 580.16 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 63 | 580.64 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 66 | 580.90 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 69 | 581.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 78 | 581.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 79 | 581.52 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 82 | 581.61 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 93 | 581.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 95 | 581.98 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 18 |
| 113 | 582.30 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 127 | 582.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 138 | 583.58 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 144 | 583.71 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 16 |
| 145 | 583.72 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 147 | 583.75 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 148 | 583.75 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 151 | 583.77 | temperature | 25 | 4320 | > th | dose dependent | sin | 13 | NA |
| 170 | 584.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 215 | 585.57 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 229 | 585.61 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 230 | 585.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 245 | 585.86 | wind | 7 | 43200 | > th | dose dependent | sin | 13 | NA |
| 256 | 586.03 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 345 | 587.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 347 | 587.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 352 | 587.87 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 369 | 588.22 | wind | 9 | 43200 | > th | dose independent | sin | 13 | NA |
| 399 | 588.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 404 | 588.77 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 21 |
| 408 | 588.89 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 431 | 589.06 | temperature | 25 | 4320 | < th | dose independent | sin | 14 | NA |
| 437 | 589.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 438 | 589.22 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 460 | 589.73 | wind | 7 | 43200 | < th | dose independent | sin | 14 | NA |
| 466 | 589.79 | temperature | 30 | 4320 | < th | dose independent | sin | 1 | NA |
| 530 | 590.42 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 13 |
| 546 | 590.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 7 |
| 549 | 590.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 16 |
| 561 | 590.60 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 23 |
| 564 | 590.65 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 21 |
| 583 | 590.91 | temperature | 25 | 4320 | > th | dose independent | sin | 14 | NA |
| 586 | 590.93 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 588 | 590.94 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 616 | 591.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 15 |
| 628 | 591.44 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 18 |
| 643 | 591.54 | temperature | 30 | 4320 | > th | dose independent | sin | 0 | NA |
| 661 | 591.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 667 | 591.82 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 19 |
| 668 | 591.82 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 22 |
| 720 | 591.92 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 744 | 591.94 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 20 |
| 809 | 592.08 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 22 |
| 851 | 592.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 872 | 592.33 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 884 | 592.41 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 23 |