Os01g0571700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os01g0571700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.75 | 0.445 | 8.73 | -0.709 | 0.388 | 1.22 | -0.135 | -1.14 | 0.249 | 22.2 | 29.8 | 271 | -- | -- |
| 89.74 | 0.441 | 8.73 | -0.778 | 0.396 | 1.08 | -0.0591 | -- | 0.281 | 21.6 | 29.6 | 271 | -- | -- |
| 89.79 | 0.441 | 8.72 | -0.704 | 0.387 | 1.22 | -- | -1.13 | 0.25 | 22.2 | 29.78 | 265 | -- | -- |
| 89.68 | 0.441 | 8.73 | -0.811 | 0.381 | 1.08 | -- | -- | 0.277 | 21.8 | 29.6 | 265 | -- | -- |
| 97.01 | 0.459 | 8.69 | -0.687 | -- | 1.08 | -- | -0.883 | 0.35 | -- | 29.5 | 226 | -- | -- |
| 118.92 | 0.511 | 8.72 | -0.978 | 0.507 | -- | 0.0895 | -- | 0.265 | 1.9 | -- | -- | -- | -- |
| 118.94 | 0.511 | 8.72 | -0.981 | 0.506 | -- | -- | -- | 0.264 | 1.86 | -- | -- | -- | -- |
| 96.07 | 0.456 | 8.7 | -0.814 | -- | 0.888 | -- | -- | 0.339 | -- | 29.1 | 204 | -- | -- |
| 106.6 | 0.481 | 8.72 | -- | 0.394 | 1.21 | -- | -- | 0.349 | 21.2 | 29.5 | 265 | -- | -- |
| 134.45 | 0.542 | 8.72 | -0.96 | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
| 144.29 | 0.562 | 8.7 | -- | 0.488 | -- | -- | -- | 0.373 | 1.8 | -- | -- | -- | -- |
| 113.49 | 0.496 | 8.68 | -- | -- | 0.933 | -- | -- | 0.428 | -- | 28.87 | 204 | -- | -- |
| 158.75 | 0.588 | 8.7 | -- | -- | -- | -- | -- | 0.382 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.04 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 3 | 90.08 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 17 | 90.25 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 18 | 90.25 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 25 | 90.29 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 11 |
| 26 | 90.29 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 11 |
| 28 | 90.31 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 30 | 90.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 38 | 90.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 14 |
| 39 | 90.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 16 |
| 49 | 90.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 58 | 90.49 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 19 | NA |
| 59 | 90.49 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 68 | 90.51 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 19 | NA |
| 74 | 90.52 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 17 | NA |
| 81 | 90.55 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 22 |
| 105 | 90.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 107 | 90.64 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 110 | 90.64 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 15 |
| 112 | 90.66 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 15 |
| 127 | 90.70 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 2 | NA |
| 157 | 90.75 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 331 | 90.99 | temperature | 30.0 | 270 | < th | dose independent | no | NA | NA |
| 333 | 90.99 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 17 |
| 334 | 90.99 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 17 |
| 336 | 90.99 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 339 | 91.00 | temperature | 25.0 | 270 | > th | dose dependent | no | NA | NA |
| 344 | 91.00 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 358 | 91.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 385 | 91.04 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 17 |
| 391 | 91.05 | temperature | 30.0 | 270 | < th | dose independent | sin | 23 | NA |
| 392 | 91.05 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 411 | 91.08 | temperature | 30.0 | 270 | > th | dose independent | rect. | 18 | 23 |
| 452 | 91.14 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 457 | 91.15 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 476 | 91.19 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 494 | 91.23 | temperature | 25.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 509 | 91.26 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 1 | NA |
| 520 | 91.28 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 23 |
| 553 | 91.34 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 1 | NA |
| 555 | 91.34 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 1 | NA |
| 588 | 91.40 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 599 | 91.42 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 605 | 91.44 | temperature | 30.0 | 270 | > th | dose independent | sin | 23 | NA |
| 622 | 91.48 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 630 | 91.50 | temperature | 30.0 | 270 | > th | dose independent | no | NA | NA |
| 631 | 91.50 | temperature | 30.0 | 270 | > th | dose independent | rect. | 8 | 11 |
| 773 | 91.64 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 23 |
| 807 | 91.72 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 825 | 91.76 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 872 | 91.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 23 |
| 893 | 91.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 932 | 91.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 12 |
| 968 | 92.02 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 972 | 92.03 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 991 | 92.06 | humidity | 60.0 | 14400 | > th | dose independent | sin | 13 | NA |