Os01g0571300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Heat shock transcription factor 31 (Fragment).
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Os01g0571300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Heat shock transcription factor 31 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.81 | 0.594 | 7.82 | -1.34 | 0.734 | 1.34 | -2.08 | 0.0919 | -0.639 | 20.4 | 19.21 | 1917 | -- | -- |
| 159.82 | 0.589 | 7.81 | -1.33 | 0.733 | 1.32 | -2.08 | -- | -0.637 | 20.4 | 19.25 | 1916 | -- | -- |
| 172.72 | 0.612 | 7.82 | -1.29 | 0.727 | 1.44 | -- | 0.297 | -0.633 | 20.2 | 19.46 | 1796 | -- | -- |
| 172.84 | 0.612 | 7.81 | -1.25 | 0.726 | 1.38 | -- | -- | -0.627 | 20.2 | 19.44 | 1796 | -- | -- |
| 201.23 | 0.661 | 7.8 | -1.29 | -- | 1.39 | -- | 0.161 | -0.661 | -- | 19.49 | 1709 | -- | -- |
| 187.22 | 0.641 | 7.87 | -1.86 | 0.697 | -- | -2.18 | -- | -0.874 | 20.4 | -- | -- | -- | -- |
| 202.06 | 0.666 | 7.87 | -1.79 | 0.706 | -- | -- | -- | -0.873 | 20.1 | -- | -- | -- | -- |
| 200.88 | 0.66 | 7.8 | -1.24 | -- | 1.48 | -- | -- | -0.638 | -- | 19.2 | 1702 | -- | -- |
| 197.23 | 0.654 | 7.75 | -- | 0.713 | 2.1 | -- | -- | -0.37 | 20.2 | 18.31 | 8640 | -- | -- |
| 229.51 | 0.708 | 7.85 | -1.8 | -- | -- | -- | -- | -0.882 | -- | -- | -- | -- | -- |
| 286.48 | 0.792 | 7.82 | -- | 0.717 | -- | -- | -- | -0.674 | 20 | -- | -- | -- | -- |
| 224.75 | 0.698 | 7.74 | -- | -- | 2.11 | -- | -- | -0.397 | -- | 18.4 | 8654 | -- | -- |
| 314.55 | 0.828 | 7.8 | -- | -- | -- | -- | -- | -0.683 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.52 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 2 | 152.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 3 | 152.83 | wind | 1 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 6 | 152.89 | wind | 9 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 9 | 153.01 | wind | 3 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 17 | 153.29 | wind | 1 | 14400 | > th | dose dependent | sin | 12 | NA |
| 18 | 153.31 | wind | 3 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 20 | 153.39 | wind | 9 | 14400 | < th | dose dependent | sin | 12 | NA |
| 32 | 153.68 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 61 | 154.05 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 63 | 154.07 | wind | 3 | 14400 | > th | dose independent | sin | 12 | NA |
| 80 | 154.25 | wind | 9 | 14400 | < th | dose dependent | rect. | 17 | 20 |
| 88 | 154.31 | wind | 1 | 14400 | > th | dose dependent | rect. | 17 | 20 |
| 90 | 154.33 | wind | 3 | 14400 | < th | dose independent | sin | 12 | NA |
| 93 | 154.35 | wind | 9 | 14400 | < th | dose dependent | rect. | 20 | 19 |
| 107 | 154.44 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 117 | 154.47 | wind | 1 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 142 | 154.62 | wind | 9 | 14400 | < th | dose dependent | rect. | 20 | 8 |
| 177 | 154.79 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 21 |
| 203 | 154.89 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 205 | 154.91 | humidity | 50 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 219 | 154.95 | wind | 1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 288 | 155.24 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 301 | 155.29 | wind | 3 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 317 | 155.35 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 364 | 155.53 | wind | 3 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 384 | 155.63 | wind | 7 | 14400 | < th | dose dependent | sin | 6 | NA |
| 400 | 155.65 | humidity | 70 | 43200 | > th | dose dependent | rect. | 14 | 12 |
| 409 | 155.67 | humidity | 70 | 43200 | > th | dose dependent | sin | 16 | NA |
| 416 | 155.69 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 434 | 155.75 | wind | 1 | 14400 | > th | dose dependent | sin | 5 | NA |
| 444 | 155.77 | wind | 7 | 14400 | > th | dose dependent | rect. | 15 | 22 |
| 474 | 155.88 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 20 |
| 479 | 155.89 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 20 |
| 573 | 156.18 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 587 | 156.21 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 608 | 156.26 | humidity | 70 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 653 | 156.37 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 677 | 156.42 | wind | 7 | 14400 | > th | dose independent | rect. | 15 | 22 |
| 681 | 156.43 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 699 | 156.48 | wind | 7 | 14400 | < th | dose independent | rect. | 15 | 22 |
| 708 | 156.50 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 715 | 156.51 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 726 | 156.53 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 22 |
| 771 | 156.64 | humidity | 90 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 772 | 156.64 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 813 | 156.74 | humidity | 70 | 43200 | > th | dose dependent | no | NA | NA |
| 839 | 156.79 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 21 |
| 856 | 156.81 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 884 | 156.85 | humidity | 80 | 43200 | > th | dose independent | sin | 4 | NA |
| 891 | 156.86 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 899 | 156.87 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 913 | 156.89 | humidity | 70 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 914 | 156.90 | humidity | 80 | 43200 | > th | dose independent | no | NA | NA |
| 942 | 156.94 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 963 | 156.97 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 978 | 156.99 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 16 |
| 983 | 157.00 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 996 | 157.03 | humidity | 70 | 43200 | > th | dose dependent | sin | 7 | NA |