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Os01g0571200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ribosomal protein L34.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0129) R2 : 0.107
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.201 (0.0272) R2dN8 : 0.138 R2N8 : 0.107
σ : 0.243
deviance : 27.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.82 0.214 10.9 -0.338 0.253 -1.61 0.038 7.69 0.244 16.8 1000 279 -- --
21.43 0.216 10.9 0.143 0.247 -0.267 0.037 -- 0.241 16.9 999.6 41 -- --
20.81 0.212 10.9 -0.351 0.251 -1.62 -- 7.73 0.242 16.8 1000 274 -- --
21.38 0.217 10.9 0.138 0.246 -0.244 -- -- 0.244 17 1000 274 -- --
24.12 0.23 10.9 -0.25 -- -1.22 -- 5.47 0.239 -- 1000 274 -- --
23.06 0.225 10.9 0.183 0.252 -- 0.0246 -- 0.227 17 -- -- -- --
23.07 0.225 10.9 0.183 0.252 -- -- -- 0.227 17 -- -- -- --
24.56 0.232 10.9 0.127 -- -0.256 -- -- 0.238 -- 1000 219 -- --
21.87 0.219 10.9 -- 0.243 -0.267 -- -- 0.231 17 1000 274 -- --
26.41 0.24 10.9 0.173 -- -- -- -- 0.221 -- -- -- -- --
23.95 0.229 10.9 -- 0.249 -- -- -- 0.207 17 -- -- -- --
24.97 0.233 10.9 -- -- -0.277 -- -- 0.226 -- 1000 274 -- --
27.21 0.243 10.9 -- -- -- -- -- 0.201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.69 atmosphere 1000.0 10 > th dose independent rect. 15 17
3 18.95 atmosphere 1000.0 270 > th dose independent rect. 12 18
23 19.33 atmosphere 995.0 10 > th dose dependent rect. 15 17
39 19.54 atmosphere 995.0 270 > th dose dependent rect. 13 17
87 19.94 atmosphere 1015.0 90 < th dose dependent rect. 19 8
91 19.99 atmosphere 1000.0 270 > th dose independent rect. 1 6
123 20.16 atmosphere 995.0 270 > th dose dependent rect. 24 7
128 20.18 atmosphere 995.0 270 > th dose dependent rect. 1 5
140 20.21 atmosphere 1000.0 90 > th dose independent rect. 3 16
149 20.23 atmosphere 1015.0 270 < th dose dependent rect. 17 8
151 20.24 precipitation 0.1 270 < th dose independent rect. 17 9
154 20.24 precipitation 0.1 270 < th dose dependent rect. 17 9
204 20.36 wind 1.0 14400 < th dose dependent rect. 2 1
215 20.39 wind 9.0 270 < th dose independent rect. 17 9
224 20.41 temperature 10.0 270 > th dose independent rect. 17 9
225 20.41 radiation 20.0 270 < th dose independent rect. 17 9
228 20.41 temperature 10.0 270 > th dose independent rect. 2 15
231 20.41 atmosphere 1015.0 270 < th dose independent rect. 2 15
237 20.43 temperature 25.0 270 < th dose independent rect. 2 3
246 20.45 wind 7.0 270 < th dose independent rect. 6 7
248 20.45 precipitation 0.1 270 < th dose independent rect. 2 15
252 20.45 precipitation 0.1 270 < th dose dependent rect. 2 15
254 20.46 atmosphere 1000.0 10 > th dose independent rect. 2 6
261 20.47 atmosphere 995.0 10 > th dose dependent rect. 2 6
263 20.47 temperature 10.0 270 > th dose dependent rect. 17 9
274 20.49 temperature 25.0 270 < th dose independent rect. 1 5
276 20.49 humidity 50.0 270 > th dose independent rect. 17 9
287 20.50 temperature 10.0 90 > th dose dependent rect. 19 8
290 20.51 temperature 15.0 270 > th dose independent rect. 6 7
304 20.53 radiation 40.0 270 < th dose dependent rect. 17 9
307 20.54 atmosphere 1005.0 10 > th dose independent rect. 24 8
311 20.54 atmosphere 1000.0 10 > th dose dependent rect. 24 8
320 20.55 wind 9.0 270 < th dose dependent rect. 6 6
321 20.55 wind 9.0 14400 > th dose dependent rect. 3 12
338 20.57 atmosphere 1000.0 90 > th dose independent rect. 13 6
346 20.58 temperature 30.0 1440 < th dose independent rect. 10 1
356 20.59 precipitation 0.1 90 < th dose independent rect. 19 8
360 20.59 precipitation 0.1 90 < th dose dependent rect. 19 8
364 20.60 atmosphere 995.0 270 > th dose independent rect. 6 6
365 20.60 atmosphere 1015.0 270 < th dose independent rect. 6 6
369 20.60 precipitation 0.1 270 < th dose independent rect. 6 7
370 20.60 wind 9.0 270 < th dose independent rect. 2 15
371 20.60 temperature 10.0 270 > th dose independent rect. 13 17
375 20.60 wind 9.0 14400 > th dose dependent rect. 13 2
377 20.60 precipitation 0.1 270 < th dose dependent rect. 6 7
394 20.62 temperature 30.0 1440 > th dose independent rect. 10 1
397 20.62 temperature 30.0 270 < th dose independent rect. 6 6
398 20.62 wind 7.0 90 < th dose independent rect. 19 8
402 20.62 radiation 1.0 270 > th dose independent rect. 17 20
419 20.64 wind 1.0 270 > th dose independent rect. 6 6
420 20.64 temperature 15.0 90 > th dose independent rect. 19 8
438 20.66 wind 9.0 14400 > th dose independent rect. 13 1
441 20.66 humidity 50.0 270 > th dose independent rect. 6 7
444 20.66 atmosphere 1000.0 90 > th dose independent rect. 13 10
462 20.67 temperature 30.0 90 < th dose independent rect. 19 8
463 20.67 humidity 50.0 90 > th dose independent rect. 19 8
465 20.67 atmosphere 995.0 90 > th dose independent rect. 19 8
469 20.67 radiation 1.0 90 < th dose independent rect. 19 8
475 20.67 temperature 30.0 1440 < th dose independent rect. 20 15
483 20.67 radiation 1.0 90 < th dose dependent rect. 19 8
499 20.68 wind 9.0 270 < th dose independent rect. 13 17
530 20.70 radiation 40.0 90 < th dose independent rect. 13 18
532 20.70 wind 9.0 270 < th dose dependent rect. 7 4
535 20.71 atmosphere 1000.0 30 > th dose independent rect. 15 4
536 20.71 wind 1.0 10 > th dose independent rect. 8 7
537 20.71 wind 9.0 10 < th dose independent rect. 8 7
550 20.72 radiation 1.0 270 > th dose independent rect. 6 6
557 20.72 temperature 15.0 270 > th dose independent rect. 6 19
563 20.73 temperature 10.0 10 > th dose independent rect. 8 7
567 20.73 atmosphere 995.0 10 > th dose independent rect. 8 7
569 20.73 atmosphere 1015.0 10 < th dose independent rect. 8 7
570 20.73 precipitation 0.1 10 < th dose independent rect. 8 7
576 20.73 atmosphere 1005.0 30 > th dose independent rect. 22 10
577 20.73 wind 9.0 14400 > th dose independent rect. 3 12
585 20.73 temperature 10.0 10 > th dose independent rect. 15 17
586 20.73 atmosphere 1000.0 270 < th dose independent rect. 15 20
593 20.73 precipitation 0.1 10 < th dose dependent rect. 8 7
602 20.74 wind 5.0 270 < th dose independent rect. 7 4
604 20.74 radiation 1.0 10 > th dose independent rect. 8 7
609 20.74 temperature 30.0 1440 < th dose independent rect. 24 11
632 20.75 temperature 30.0 270 < th dose dependent rect. 2 3
633 20.75 temperature 30.0 270 < th dose dependent rect. 1 5
637 20.75 atmosphere 1015.0 90 < th dose dependent rect. 19 18
649 20.76 wind 1.0 270 > th dose independent rect. 13 16
654 20.76 wind 1.0 270 > th dose independent rect. 12 18
675 20.77 wind 9.0 270 < th dose independent rect. 6 19
676 20.77 precipitation 0.1 270 < th dose independent rect. 6 19
678 20.77 atmosphere 1000.0 270 > th dose independent rect. 21 22
688 20.77 radiation 1.0 90 < th dose dependent rect. 14 13
692 20.77 precipitation 0.1 270 < th dose dependent rect. 6 19
694 20.78 temperature 30.0 270 < th dose independent rect. 7 4
697 20.78 temperature 30.0 1440 < th dose independent rect. 5 6
726 20.78 radiation 1.0 90 < th dose dependent rect. 9 18
730 20.79 temperature 15.0 270 > th dose independent rect. 7 4
744 20.79 temperature 30.0 1440 < th dose independent rect. 2 9
778 20.80 humidity 50.0 1440 > th dose independent rect. 16 1
779 20.80 wind 9.0 14400 > th dose independent rect. 11 3
780 20.80 wind 1.0 270 > th dose independent rect. 7 4
784 20.80 temperature 10.0 1440 > th dose independent rect. 9 7
787 20.80 temperature 30.0 30 < th dose independent rect. 8 7
788 20.80 atmosphere 1000.0 10 > th dose independent rect. 13 7
791 20.80 atmosphere 995.0 270 > th dose independent rect. 17 9
796 20.80 temperature 10.0 1440 > th dose independent rect. 16 17
800 20.80 radiation 30.0 10 < th dose independent rect. 14 18
813 20.81 wind 1.0 270 > th dose independent rect. 2 2
815 20.81 temperature 25.0 270 > th dose independent rect. 14 2
830 20.81 precipitation 0.1 270 < th dose independent rect. 12 18
834 20.81 wind 9.0 14400 > th dose dependent sin 5 NA
841 20.81 precipitation 0.1 270 < th dose dependent rect. 12 18
852 20.82 wind 9.0 10 < th dose independent rect. 15 17
861 20.82 atmosphere 1000.0 90 < th dose independent rect. 17 22
891 20.83 wind 7.0 270 < th dose independent rect. 17 19
943 20.85 atmosphere 995.0 270 > th dose independent rect. 7 4
944 20.85 atmosphere 1015.0 270 < th dose independent rect. 7 4
965 20.85 precipitation 0.1 30 < th dose independent rect. 4 15
972 20.85 temperature 15.0 90 > th dose independent rect. 19 18
976 20.85 atmosphere 1000.0 10 < th dose independent rect. 16 19
978 20.85 temperature 10.0 270 > th dose independent rect. 11 20
984 20.85 precipitation 0.1 30 < th dose dependent rect. 4 15
985 20.86 atmosphere 1000.0 270 > th dose independent no NA NA
988 20.86 precipitation 0.1 270 < th dose independent rect. 7 4
992 20.86 precipitation 0.1 270 < th dose independent rect. 1 5