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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0569200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1618 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.0362) R2 : 0.254
β1 : -0.892 (0.134) R2dD : 0.0894 R2D : 0.0657
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.05 (0.117) R2dE : 0.184 R2E : 0.159
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0643 (0.0778) R2dN8 : 0.00248 R2N8 : 0.00673
σ : 0.677
deviance : 210.99
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28.77
memory length : 609
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
193.65 0.654 3.88 -0.0331 0.704 0.185 -0.548 7.85 0.303 17 32.14 875 -- --
195.8 0.652 3.98 -0.923 0.651 1.04 -0.678 -- 0.322 16.8 32.01 894 -- --
194.18 0.649 3.88 -0.0132 0.711 0.156 -- 7.96 0.309 17.1 32.2 896 -- --
196.05 0.652 3.99 -0.924 0.702 0.996 -- -- 0.3 17.2 32 919 -- --
215.42 0.684 3.89 -0.182 -- 0.372 -- 8.38 0.283 -- 32 756 -- --
227.38 0.707 4.03 -0.765 0.819 -- 0.0462 -- 0.161 17.9 -- -- -- --
227.39 0.706 4.03 -0.765 0.819 -- -- -- 0.161 17.9 -- -- -- --
210.99 0.677 4.01 -0.892 -- 1.05 -- -- 0.0643 -- 28.77 609 -- --
218.98 0.689 3.97 -- 0.719 0.898 -- -- 0.397 17.1 32.8 899 -- --
262.18 0.757 4.01 -0.79 -- -- -- -- 0.142 -- -- -- -- --
242.82 0.729 4.01 -- 0.831 -- -- -- 0.246 17.9 -- -- -- --
235.09 0.714 4.01 -- -- 1.13 -- -- 0.162 -- 28.76 613 -- --
278.63 0.779 3.99 -- -- -- -- -- 0.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.27 temperature 10 720 > th dose dependent rect. 6 20
3 193.59 temperature 30 720 < th dose independent rect. 15 14
14 194.09 temperature 30 720 < th dose independent sin 14 NA
22 194.40 temperature 30 720 < th dose independent rect. 16 7
32 194.61 temperature 30 720 > th dose dependent sin 13 NA
33 194.65 temperature 30 720 > th dose independent sin 13 NA
56 195.12 temperature 30 720 > th dose independent rect. 15 18
59 195.14 temperature 15 720 > th dose dependent sin 19 NA
76 195.40 temperature 25 720 > th dose dependent rect. 14 9
80 195.42 temperature 25 720 > th dose dependent rect. 14 19
105 195.64 temperature 30 720 > th dose independent rect. 15 4
132 195.75 temperature 30 720 > th dose dependent rect. 14 5
148 195.80 temperature 30 720 < th dose independent rect. 13 8
156 195.87 temperature 30 720 < th dose independent rect. 17 10
162 195.92 temperature 30 720 < th dose independent rect. 11 10
201 196.00 temperature 30 720 < th dose independent rect. 13 16
240 196.18 temperature 10 720 > th dose dependent rect. 14 10
285 196.29 temperature 30 720 < th dose independent rect. 11 18
319 196.51 temperature 30 720 < th dose independent rect. 15 18
594 197.50 wind 1 43200 > th dose dependent rect. 9 1
604 197.54 wind 9 43200 < th dose dependent rect. 9 1
685 197.73 temperature 25 720 > th dose dependent no NA NA
692 197.78 temperature 30 720 < th dose independent rect. 13 21
716 197.83 radiation 10 1440 > th dose independent rect. 17 13
754 197.95 radiation 10 1440 > th dose independent rect. 17 1
786 198.03 temperature 25 720 > th dose dependent rect. 16 23
813 198.11 temperature 30 720 < th dose independent rect. 15 22
832 198.16 temperature 25 720 > th dose dependent rect. 21 23
847 198.21 temperature 10 720 > th dose dependent rect. 10 23
870 198.29 atmosphere 1005 720 < th dose independent rect. 17 1
955 198.61 temperature 10 720 > th dose dependent rect. 21 23
965 198.66 temperature 30 4320 > th dose dependent rect. 17 1
990 198.74 temperature 10 720 > th dose dependent no NA NA