Os01g0566900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 3'-5' exonuclease domain containing protein.
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Os01g0566900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 3'-5' exonuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.13 | 0.266 | 13.8 | -0.201 | 0.498 | -0.135 | 0.618 | -1.07 | 0.166 | 2.23 | 19.7 | 1196 | -- | -- |
| 33.3 | 0.271 | 13.7 | -0.0722 | 0.53 | 0.158 | 0.464 | -- | 0.178 | 2.23 | 19.7 | 1196 | -- | -- |
| 33.02 | 0.268 | 13.8 | -0.187 | 0.491 | -0.13 | -- | -1.05 | 0.167 | 2.29 | 19.6 | 1614 | -- | -- |
| 33.68 | 0.27 | 13.7 | -0.21 | 0.494 | 0.36 | -- | -- | 0.159 | 2.42 | 16.3 | 6053 | -- | -- |
| 47.66 | 0.322 | 13.8 | -0.223 | -- | -0.0742 | -- | -1 | 0.16 | -- | 20.1 | 1661 | -- | -- |
| 34.24 | 0.274 | 13.7 | -0.0349 | 0.495 | -- | 0.456 | -- | 0.205 | 2.27 | -- | -- | -- | -- |
| 35 | 0.277 | 13.7 | -0.0478 | 0.496 | -- | -- | -- | 0.202 | 2.3 | -- | -- | -- | -- |
| 48.07 | 0.323 | 13.7 | -0.2 | -- | 0.35 | -- | -- | 0.168 | -- | 16.7 | 5323 | -- | -- |
| 34.26 | 0.273 | 13.7 | -- | 0.49 | 0.335 | -- | -- | 0.194 | 2.24 | 15.3 | 3168 | -- | -- |
| 49.61 | 0.329 | 13.7 | -0.0269 | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
| 35.06 | 0.277 | 13.7 | -- | 0.495 | -- | -- | -- | 0.207 | 2.3 | -- | -- | -- | -- |
| 48.52 | 0.324 | 13.7 | -- | -- | 0.34 | -- | -- | 0.198 | -- | 16.62 | 2785 | -- | -- |
| 49.63 | 0.329 | 13.7 | -- | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.96 | humidity | 90.0 | 90 | > th | dose independent | rect. | 14 | 1 |
| 4 | 30.96 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 7 | 30.98 | wind | 1.0 | 30 | < th | dose independent | rect. | 14 | 2 |
| 9 | 30.98 | wind | 1.0 | 30 | < th | dose dependent | rect. | 14 | 2 |
| 31 | 31.10 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 14 | 3 |
| 32 | 31.20 | wind | 1.0 | 30 | < th | dose independent | rect. | 12 | 4 |
| 34 | 31.20 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 10 |
| 42 | 31.25 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 14 | 3 |
| 49 | 31.34 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 52 | 31.36 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 82 | 31.50 | wind | 3.0 | 43200 | > th | dose independent | rect. | 24 | 3 |
| 83 | 31.52 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 85 | 31.55 | wind | 3.0 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 86 | 31.57 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 90 | 31.60 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 103 | 31.63 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 22 | 18 |
| 107 | 31.65 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 125 | 31.70 | wind | 3.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 130 | 31.71 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 153 | 31.75 | wind | 3.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 160 | 31.76 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 5 | 2 |
| 162 | 31.76 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 5 |
| 186 | 31.82 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 192 | 31.82 | temperature | 20.0 | 720 | < th | dose independent | rect. | 6 | 16 |
| 206 | 31.85 | wind | 9.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 210 | 31.86 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 211 | 31.86 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 212 | 31.86 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 216 | 31.87 | wind | 1.0 | 30 | < th | dose dependent | rect. | 12 | 4 |
| 266 | 31.93 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 5 |
| 273 | 31.93 | wind | 3.0 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 275 | 31.93 | wind | 3.0 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 277 | 31.94 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 287 | 31.95 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 289 | 31.95 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 296 | 31.96 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 302 | 31.96 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 329 | 31.97 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 332 | 31.98 | wind | 3.0 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 348 | 31.99 | humidity | 50.0 | 720 | > th | dose independent | rect. | 16 | 8 |
| 360 | 32.00 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 364 | 32.00 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 370 | 32.01 | temperature | 20.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 373 | 32.01 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 393 | 32.01 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 16 | 14 |
| 396 | 32.02 | temperature | 20.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 397 | 32.02 | temperature | 20.0 | 720 | < th | dose independent | sin | 22 | NA |
| 403 | 32.02 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 11 |
| 404 | 32.02 | radiation | 40.0 | 30 | < th | dose independent | rect. | 24 | 22 |
| 417 | 32.03 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 13 |
| 420 | 32.03 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 10 | 17 |
| 422 | 32.03 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 23 | 23 |
| 432 | 32.03 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 24 | 22 |
| 433 | 32.04 | wind | 3.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 446 | 32.04 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 463 | 32.05 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 470 | 32.05 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 12 | 11 |
| 471 | 32.05 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 480 | 32.05 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 503 | 32.06 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 534 | 32.07 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 23 | 8 |
| 557 | 32.08 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 574 | 32.08 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 14 |
| 595 | 32.09 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 618 | 32.09 | wind | 3.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 619 | 32.09 | wind | 5.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 620 | 32.09 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 631 | 32.10 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 651 | 32.10 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 654 | 32.10 | wind | 3.0 | 720 | < th | dose independent | rect. | 4 | 19 |
| 674 | 32.10 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 692 | 32.11 | temperature | 25.0 | 90 | > th | dose independent | rect. | 5 | 11 |
| 706 | 32.11 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 22 | 2 |
| 708 | 32.11 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 737 | 32.12 | wind | 3.0 | 720 | > th | dose independent | rect. | 7 | 14 |
| 760 | 32.13 | wind | 3.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 761 | 32.13 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 773 | 32.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 12 |
| 778 | 32.13 | humidity | 50.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 779 | 32.13 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 781 | 32.13 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 808 | 32.14 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 818 | 32.14 | wind | 3.0 | 270 | < th | dose independent | rect. | 11 | 12 |
| 819 | 32.14 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 869 | 32.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 886 | 32.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 1 |
| 887 | 32.16 | humidity | 80.0 | 90 | > th | dose independent | rect. | 22 | 1 |
| 926 | 32.17 | wind | 3.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 948 | 32.17 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 964 | 32.18 | wind | 3.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 1000 | 32.18 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |