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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0566000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.2 (0.0462) R2 : 0.467
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.27 (0.106) R2dC : 0.168 R2C : 0.178
β3 : 2.7 (0.205) R2dE : 0.287 R2E : 0.299
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0111 (0.11) R2dN8 : 0.000102 R2N8 : 0.00155
σ : 0.831
deviance : 318.08
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_____
C
peak time of C : 10.9
E
wheather : humidity
threshold : 92.53
memory length : 4299
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.47
open length of G : 1.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
317.67 0.837 4.16 -0.062 1.26 2.39 0.834 1.65 -0.0111 11.1 92.51 4294 4.98 1.67
318.48 0.831 4.18 0.00198 1.33 2.56 1.28 -- 0.0289 10.7 92.66 4282 5.46 1.15
320.33 0.834 4.17 0.0083 1.26 2.38 -- 1.59 -0.0476 11 92.69 4294 5.03 1.61
318.5 0.831 4.17 0.0987 1.25 2.72 -- -- 0.0155 10.9 92.63 4294 5.47 1.1
371.12 0.897 4.26 -0.194 -- 2.66 -- 1.66 -0.0629 -- 91.55 4923 5.08 1.67
403.98 0.942 4.36 1.04 1.32 -- 0.788 -- -0.698 10.9 -- -- -- --
406.56 0.944 4.35 1.07 1.31 -- -- -- -0.696 10.8 -- -- -- --
374.14 0.901 4.22 -0.254 -- 3.12 -- -- 0.0577 -- 91.88 4874 5.56 1.03
318.08 0.831 4.2 -- 1.27 2.7 -- -- -0.0111 10.9 92.53 4299 5.47 1.08
513.43 1.06 4.39 1.05 -- -- -- -- -0.704 -- -- -- -- --
436.93 0.978 4.38 -- 1.31 -- -- -- -0.815 10.8 -- -- -- --
373.66 0.9 4.26 -- -- 2.92 -- -- -0.107 -- 92.45 4884 5.57 1
542.31 1.09 4.41 -- -- -- -- -- -0.82 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.83 wind 9 43200 > th dose independent rect. 9 8
5 291.18 wind 9 43200 < th dose independent rect. 8 9
8 292.13 wind 3 43200 < th dose independent rect. 11 1
14 292.61 wind 9 43200 > th dose dependent rect. 10 7
15 292.62 wind 9 43200 > th dose independent rect. 10 4
17 292.79 wind 9 43200 > th dose independent sin 23 NA
27 293.25 wind 3 43200 > th dose independent rect. 11 1
29 293.63 wind 1 43200 < th dose dependent rect. 11 1
35 293.94 wind 9 43200 < th dose independent rect. 5 12
56 295.00 wind 9 43200 < th dose independent sin 23 NA
82 295.91 wind 9 43200 < th dose independent rect. 24 17
99 296.37 wind 9 43200 > th dose independent rect. 11 22
105 296.55 wind 9 43200 > th dose independent rect. 9 15
107 296.57 wind 9 43200 > th dose independent rect. 9 18
136 297.20 wind 9 43200 < th dose independent rect. 24 19
160 297.59 wind 3 43200 > th dose independent rect. 21 1
164 297.68 wind 3 43200 < th dose independent rect. 21 1
173 297.77 wind 5 43200 < th dose dependent rect. 21 5
188 298.06 wind 3 43200 < th dose independent rect. 20 4
198 298.14 wind 7 43200 > th dose dependent sin 22 NA
214 298.38 wind 1 14400 < th dose dependent rect. 21 5
219 298.56 wind 9 43200 > th dose independent rect. 18 23
220 298.56 wind 9 43200 > th dose dependent rect. 11 21
232 298.72 wind 1 14400 < th dose independent rect. 22 4
239 298.82 wind 7 43200 < th dose dependent rect. 21 3
251 298.99 wind 9 43200 < th dose independent rect. 11 22
260 299.07 wind 3 43200 > th dose independent rect. 20 4
269 299.18 wind 9 43200 < th dose independent rect. 9 18
356 300.06 wind 1 14400 > th dose independent rect. 23 3
374 300.29 wind 3 43200 > th dose independent rect. 10 4
410 300.63 wind 9 43200 > th dose independent no NA NA
414 300.70 wind 9 43200 < th dose independent rect. 18 23
428 300.86 wind 3 43200 > th dose independent rect. 19 8
431 300.93 wind 1 43200 > th dose dependent rect. 22 1
432 300.93 wind 1 43200 > th dose dependent rect. 21 3
435 300.95 wind 1 14400 < th dose dependent rect. 19 7
452 301.19 wind 1 14400 < th dose independent rect. 24 2
479 301.45 wind 9 43200 > th dose independent rect. 15 23
481 301.46 wind 9 43200 < th dose dependent rect. 11 3
492 301.55 wind 1 43200 > th dose dependent rect. 11 3
498 301.58 wind 7 43200 > th dose dependent rect. 9 15
524 301.80 wind 7 43200 > th dose dependent rect. 9 18
559 302.20 radiation 30 43200 < th dose independent rect. 9 1
569 302.27 wind 3 43200 < th dose independent rect. 19 8
584 302.39 radiation 30 43200 < th dose independent rect. 9 3
589 302.44 radiation 10 43200 < th dose independent rect. 17 15
590 302.44 wind 9 43200 < th dose dependent rect. 12 1
605 302.54 wind 9 43200 < th dose independent rect. 15 2
608 302.56 wind 9 43200 < th dose independent no NA NA
651 302.85 wind 1 43200 > th dose dependent rect. 10 21
665 302.93 wind 9 43200 < th dose dependent rect. 10 21
667 302.95 wind 3 43200 < th dose independent rect. 6 9
672 302.98 wind 1 43200 > th dose dependent rect. 21 5
683 303.06 wind 1 43200 > th dose dependent rect. 10 5
706 303.20 wind 1 43200 > th dose dependent rect. 12 1
714 303.24 wind 3 43200 > th dose independent rect. 6 9
720 303.28 radiation 10 43200 < th dose independent rect. 5 3
735 303.35 wind 7 43200 > th dose dependent rect. 15 2
744 303.37 radiation 10 43200 < th dose independent rect. 24 8
748 303.37 radiation 30 43200 < th dose independent rect. 24 12
754 303.38 radiation 30 43200 < th dose independent rect. 5 7
766 303.38 wind 3 43200 > th dose independent rect. 10 21
797 303.53 wind 3 43200 < th dose independent rect. 8 7
831 303.71 wind 3 43200 < th dose independent rect. 10 21
877 303.89 wind 9 43200 > th dose independent rect. 15 2
892 303.95 wind 3 43200 > th dose independent rect. 5 22
893 303.96 radiation 10 43200 < th dose independent rect. 6 1
906 304.02 wind 9 43200 < th dose independent rect. 15 23
911 304.04 wind 3 43200 > th dose independent rect. 18 21
912 304.04 wind 9 43200 < th dose dependent sin 13 NA
944 304.21 wind 7 43200 < th dose dependent rect. 17 13
945 304.21 wind 9 43200 < th dose dependent rect. 22 21
952 304.24 wind 3 43200 < th dose independent rect. 18 21
958 304.27 wind 1 43200 > th dose dependent rect. 22 21
980 304.36 wind 1 43200 > th dose dependent sin 13 NA
986 304.39 radiation 20 43200 < th dose independent rect. 16 9
990 304.39 wind 1 43200 > th dose dependent rect. 18 9
991 304.40 radiation 20 43200 < th dose independent rect. 16 3
997 304.40 wind 9 43200 < th dose dependent rect. 5 22
1000 304.41 radiation 20 43200 < th dose independent rect. 16 6