Os01g0565900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein transport protein Sec61 beta subunit.
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Os01g0565900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein transport protein Sec61 beta subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.64 | 0.395 | 11.2 | -0.225 | 0.628 | 0.332 | -0.456 | -1.6 | -0.128 | 19.4 | 20.3 | 3779 | -- | -- |
| 72.92 | 0.398 | 11.1 | -0.0918 | 0.629 | 0.806 | -0.532 | -- | -0.0778 | 19.5 | 18.7 | 6836 | -- | -- |
| 70.68 | 0.392 | 11.2 | -0.216 | 0.629 | 0.309 | -- | -1.69 | -0.108 | 19.3 | 20.21 | 2433 | -- | -- |
| 72.6 | 0.397 | 11.1 | 0.00898 | 0.632 | 0.835 | -- | -- | -0.03 | 19.3 | 18.5 | 3625 | -- | -- |
| 91.44 | 0.445 | 11.1 | -0.167 | -- | 0.303 | -- | -1.67 | -0.108 | -- | 20.38 | 2320 | -- | -- |
| 81.07 | 0.422 | 11.1 | 0.401 | 0.628 | -- | -0.478 | -- | 0.102 | 19.5 | -- | -- | -- | -- |
| 81.69 | 0.423 | 11.1 | 0.412 | 0.628 | -- | -- | -- | 0.102 | 19.4 | -- | -- | -- | -- |
| 93.54 | 0.45 | 11.1 | 0.00032 | -- | 0.829 | -- | -- | -0.0464 | -- | 18.48 | 3613 | -- | -- |
| 72.53 | 0.397 | 11.1 | -- | 0.626 | 0.864 | -- | -- | -0.058 | 19.3 | 18.45 | 3642 | -- | -- |
| 102.76 | 0.474 | 11.1 | 0.403 | -- | -- | -- | -- | 0.0918 | -- | -- | -- | -- | -- |
| 86.18 | 0.434 | 11.1 | -- | 0.625 | -- | -- | -- | 0.056 | 19.5 | -- | -- | -- | -- |
| 93.31 | 0.45 | 11.1 | -- | -- | 0.867 | -- | -- | -0.0667 | -- | 18.46 | 3600 | -- | -- |
| 107.04 | 0.483 | 11.1 | -- | -- | -- | -- | -- | 0.0472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.05 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 3 | 67.32 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 4 | 67.61 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 8 | 67.96 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 10 | 68.14 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 15 | 68.56 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 24 | 68.72 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 26 | 68.88 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 40 | 69.34 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 14 |
| 50 | 69.40 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 2 | NA |
| 62 | 69.51 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 63 | 69.52 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 14 |
| 69 | 69.55 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 18 |
| 74 | 69.57 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 87 | 69.62 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 112 | 69.71 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 113 | 69.71 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 122 | 69.73 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 141 | 69.81 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 154 | 69.84 | humidity | 90.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 168 | 69.87 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 188 | 69.92 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 203 | 69.98 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 218 | 70.01 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 222 | 70.02 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 337 | 70.30 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 346 | 70.32 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 349 | 70.33 | wind | 5.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 379 | 70.39 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 386 | 70.41 | humidity | 90.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 387 | 70.41 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 391 | 70.41 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 395 | 70.42 | wind | 5.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 426 | 70.46 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 436 | 70.47 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 438 | 70.48 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 480 | 70.55 | wind | 1.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 503 | 70.59 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 520 | 70.61 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 547 | 70.65 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 548 | 70.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 555 | 70.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 588 | 70.71 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 604 | 70.73 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 11 | 21 |
| 615 | 70.74 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 619 | 70.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 638 | 70.77 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 649 | 70.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 706 | 70.84 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 715 | 70.85 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 728 | 70.86 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 745 | 70.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 23 |
| 756 | 70.89 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 759 | 70.89 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 761 | 70.89 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 763 | 70.90 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 768 | 70.90 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 829 | 70.95 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 830 | 70.95 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 871 | 70.99 | wind | 1.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 885 | 71.00 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 891 | 71.01 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 945 | 71.06 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 955 | 71.07 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 961 | 71.08 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 971 | 71.09 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 995 | 71.11 | temperature | 20.0 | 4320 | < th | dose independent | sin | 14 | NA |