FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0564600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0491) R2 : 0.0076
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.193 (0.103) R2dN8 : 0.00981 R2N8 : 0.0076
σ : 0.925
deviance : 393
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
360.7 0.892 3.12 -0.12 0.00345 7.83 -1.65 -34.9 -0.15 17.4 1005 36 6.33 2.88
374.61 0.908 3.11 -0.0331 0.0408 3.64 1.32 -- -0.182 5.16 996.5 23 6.1 3.68
365.9 0.891 3.12 -0.0731 0.0893 7.99 -- -35.7 -0.153 12.7 1004 34 6.02 3.07
377.94 0.911 3.11 -0.0306 0.142 3.67 -- -- -0.187 9.64 996.5 23 6.1 3.68
365.72 0.891 3.14 -0.179 -- 9.95 -- -47 -0.168 -- 1004 33 6.46 2.37
387.7 0.923 3.11 -0.0186 0.0795 -- 1.41 -- -0.191 5.47 -- -- -- --
391.3 0.926 3.11 -0.0105 0.17 -- -- -- -0.195 9.29 -- -- -- --
379.12 0.911 3.12 -0.0321 -- 3.73 -- -- -0.186 -- 996.3 118 5.98 3.29
377.96 0.91 3.11 -- 0.142 3.67 -- -- -0.183 9.65 996.4 33 6.11 3.63
393 0.926 3.12 -0.0113 -- -- -- -- -0.195 -- -- -- -- --
391.31 0.925 3.11 -- 0.17 -- -- -- -0.194 9.29 -- -- -- --
379.15 0.91 3.12 -- -- 3.73 -- -- -0.183 -- 996.3 118 5.98 3.29
393 0.925 3.12 -- -- -- -- -- -0.193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 362.76 atmosphere 1005.0 30 < th dose dependent rect. 7 1
16 368.86 temperature 25.0 30 > th dose dependent rect. 5 1
19 371.33 wind 1.0 1440 < th dose dependent rect. 20 2
24 372.49 wind 1.0 1440 > th dose independent rect. 21 1
26 372.86 radiation 1.0 90 < th dose independent rect. 8 3
28 372.86 radiation 1.0 90 < th dose dependent rect. 8 3
31 373.22 atmosphere 1010.0 90 < th dose dependent rect. 6 5
34 373.39 temperature 20.0 10 < th dose independent rect. 4 1
36 373.39 wind 5.0 30 < th dose independent rect. 7 5
47 373.68 wind 1.0 30 < th dose independent rect. 7 1
53 373.86 temperature 25.0 10 > th dose independent rect. 5 1
57 374.03 wind 1.0 1440 < th dose independent rect. 21 1
68 374.19 wind 5.0 30 < th dose independent rect. 7 11
69 374.22 wind 1.0 14400 < th dose independent rect. 6 1
73 374.32 atmosphere 1000.0 10 < th dose independent rect. 7 1
88 374.35 wind 1.0 30 > th dose independent sin 19 NA
91 374.36 wind 7.0 30 < th dose dependent rect. 7 5
97 374.45 wind 1.0 14400 < th dose dependent rect. 6 1
100 374.46 wind 7.0 90 > th dose independent rect. 1 8
105 374.56 wind 7.0 90 > th dose dependent rect. 1 8
107 374.57 wind 7.0 90 > th dose independent rect. 3 6
118 374.74 atmosphere 1000.0 10 < th dose independent rect. 24 3
120 374.77 wind 7.0 90 > th dose independent rect. 7 2
123 374.77 wind 5.0 30 < th dose independent rect. 7 14
128 374.84 atmosphere 1000.0 90 < th dose independent rect. 24 1
130 374.84 wind 7.0 90 > th dose dependent rect. 7 2
142 375.01 atmosphere 1015.0 10 < th dose dependent rect. 7 5
146 375.16 wind 1.0 14400 > th dose independent rect. 6 1
158 375.36 wind 5.0 30 < th dose dependent rect. 7 12
167 375.47 humidity 90.0 90 > th dose independent rect. 14 3
169 375.49 wind 1.0 30 > th dose independent rect. 11 20
172 375.53 atmosphere 1000.0 90 < th dose dependent rect. 24 1
175 375.57 atmosphere 1000.0 43200 < th dose dependent rect. 6 2
181 375.65 atmosphere 1000.0 43200 < th dose dependent rect. 5 4
184 375.71 atmosphere 1000.0 43200 < th dose dependent rect. 4 6
189 375.78 wind 5.0 270 < th dose independent rect. 4 7
196 375.86 temperature 25.0 90 < th dose dependent rect. 2 3
200 375.90 atmosphere 1000.0 43200 < th dose dependent rect. 3 8
211 375.98 radiation 10.0 14400 < th dose dependent rect. 10 1
217 376.03 atmosphere 1000.0 43200 < th dose dependent rect. 2 10
228 376.08 humidity 50.0 4320 < th dose dependent rect. 15 2
231 376.12 atmosphere 995.0 43200 > th dose independent rect. 12 13
235 376.14 atmosphere 1005.0 43200 < th dose dependent rect. 9 1
240 376.16 humidity 50.0 1440 < th dose dependent rect. 11 2
242 376.17 wind 7.0 270 < th dose dependent rect. 7 1
243 376.17 humidity 80.0 14400 < th dose dependent rect. 23 1
249 376.20 atmosphere 995.0 43200 < th dose independent rect. 12 14
257 376.24 humidity 80.0 14400 > th dose independent rect. 5 1
279 376.25 temperature 25.0 90 < th dose dependent rect. 2 1
280 376.25 radiation 10.0 4320 < th dose dependent rect. 8 1
285 376.27 atmosphere 995.0 43200 < th dose independent sin 17 NA
287 376.28 humidity 70.0 14400 > th dose independent rect. 20 14
289 376.28 humidity 90.0 14400 < th dose dependent rect. 8 1
296 376.31 atmosphere 995.0 43200 > th dose independent rect. 11 16
299 376.31 wind 7.0 30 < th dose dependent rect. 7 14
300 376.32 atmosphere 995.0 43200 < th dose independent rect. 13 11
305 376.33 humidity 80.0 14400 < th dose independent rect. 23 2
307 376.34 humidity 70.0 14400 > th dose independent rect. 2 8
308 376.34 humidity 70.0 14400 > th dose independent rect. 24 10
313 376.35 humidity 70.0 14400 > th dose independent rect. 6 4
314 376.35 humidity 70.0 14400 > th dose independent rect. 4 6
317 376.35 atmosphere 995.0 43200 > th dose independent rect. 13 11
319 376.35 atmosphere 1000.0 43200 < th dose dependent sin 5 NA
323 376.36 humidity 90.0 90 > th dose dependent rect. 14 3
324 376.37 radiation 10.0 270 < th dose independent sin 11 NA
325 376.37 atmosphere 995.0 43200 > th dose independent rect. 12 22
328 376.38 atmosphere 995.0 43200 > th dose independent sin 17 NA
335 376.40 atmosphere 995.0 43200 < th dose independent rect. 11 16
338 376.41 atmosphere 995.0 43200 < th dose independent rect. 12 22
340 376.42 wind 5.0 1440 > th dose independent rect. 9 1
343 376.42 humidity 80.0 14400 < th dose dependent rect. 1 2
373 376.48 humidity 70.0 14400 < th dose independent rect. 8 2
374 376.48 radiation 40.0 30 < th dose independent rect. 7 4
376 376.48 atmosphere 995.0 43200 > th dose independent rect. 10 18
380 376.50 humidity 50.0 14400 > th dose dependent rect. 8 1
397 376.55 humidity 70.0 14400 < th dose independent rect. 6 4
411 376.56 humidity 80.0 14400 > th dose independent rect. 2 4
414 376.57 atmosphere 995.0 43200 > th dose independent rect. 9 20
416 376.57 humidity 80.0 14400 < th dose dependent rect. 23 4
420 376.58 radiation 10.0 14400 < th dose dependent rect. 9 4
425 376.60 precipitation 0.1 14400 < th dose independent rect. 21 2
428 376.60 precipitation 0.1 14400 < th dose dependent rect. 21 2
429 376.60 radiation 10.0 14400 < th dose dependent rect. 7 6
435 376.64 precipitation 0.1 14400 > th dose independent rect. 21 2
451 376.66 wind 5.0 1440 < th dose independent rect. 9 1
453 376.66 humidity 80.0 14400 > th dose independent rect. 23 7
456 376.66 precipitation 0.1 14400 > th dose dependent rect. 21 2
459 376.67 atmosphere 1005.0 1440 < th dose independent rect. 12 1
460 376.67 humidity 80.0 10 < th dose independent rect. 9 2
463 376.68 atmosphere 1005.0 1440 > th dose independent rect. 12 1
489 376.72 atmosphere 1005.0 1440 > th dose independent rect. 12 3
495 376.73 radiation 1.0 1440 < th dose independent rect. 9 1
510 376.76 wind 7.0 720 < th dose independent rect. 20 15
522 376.79 atmosphere 1000.0 270 > th dose independent rect. 7 1
549 376.81 wind 5.0 270 < th dose independent rect. 7 1
550 376.81 humidity 80.0 14400 < th dose independent rect. 4 1
552 376.81 radiation 10.0 14400 > th dose independent rect. 10 1
554 376.81 humidity 70.0 10 > th dose independent rect. 7 4
559 376.83 radiation 1.0 1440 > th dose independent rect. 9 1
602 376.91 humidity 60.0 14400 < th dose independent rect. 11 1
605 376.91 humidity 70.0 90 < th dose dependent rect. 8 1
608 376.91 humidity 50.0 30 > th dose dependent rect. 7 4
609 376.91 atmosphere 1000.0 43200 < th dose dependent rect. 6 20
610 376.92 atmosphere 1000.0 43200 > th dose independent rect. 8 1
612 376.92 humidity 80.0 14400 < th dose independent rect. 2 4
671 376.99 atmosphere 1000.0 43200 < th dose independent rect. 8 1
689 377.01 atmosphere 995.0 43200 > th dose independent no NA NA
695 377.01 atmosphere 995.0 43200 > th dose independent rect. 21 22
742 377.06 radiation 10.0 270 < th dose independent rect. 21 14
760 377.08 radiation 10.0 14400 > th dose independent rect. 6 8
788 377.10 precipitation 0.1 43200 > th dose dependent rect. 20 17
827 377.12 atmosphere 995.0 43200 < th dose dependent rect. 14 10
874 377.18 wind 5.0 1440 > th dose dependent rect. 24 10
919 377.23 wind 1.0 30 > th dose independent rect. 1 23
932 377.24 temperature 25.0 90 < th dose independent rect. 19 11
949 377.25 wind 5.0 30 < th dose independent rect. 7 20
952 377.26 temperature 30.0 1440 > th dose independent rect. 15 1
955 377.26 temperature 20.0 30 < th dose independent rect. 3 19
967 377.27 wind 1.0 10 > th dose independent rect. 21 10
984 377.30 humidity 80.0 270 > th dose independent rect. 7 1
987 377.30 atmosphere 1000.0 43200 < th dose dependent no NA NA
996 377.32 wind 5.0 1440 > th dose independent rect. 24 10
1000 377.32 precipitation 0.1 270 < th dose independent rect. 8 23