Os01g0564400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0564400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.64 | 0.324 | 8.21 | 0.692 | 1.02 | -0.487 | -0.578 | 2.83 | 0.101 | 5.94 | 20.4 | 1496 | -- | -- |
| 52.71 | 0.338 | 8.29 | 0.0902 | 1.04 | -0.607 | -0.563 | -- | -0.0215 | 5.9 | 9.254 | 11129 | -- | -- |
| 48.32 | 0.324 | 8.21 | 0.719 | 1 | -0.503 | -- | 2.97 | 0.111 | 6.01 | 20.82 | 1606 | -- | -- |
| 53.44 | 0.34 | 8.29 | 0.0752 | 1.03 | -0.597 | -- | -- | -0.0229 | 5.93 | 9.234 | 11133 | -- | -- |
| 70.82 | 0.392 | 8.22 | 0.75 | -- | -1.38 | -- | 4.28 | 0.198 | -- | 22.07 | 378 | -- | -- |
| 58.52 | 0.359 | 8.33 | -0.291 | 1.02 | -- | -0.535 | -- | -0.217 | 5.99 | -- | -- | -- | -- |
| 59.22 | 0.36 | 8.33 | -0.296 | 1.02 | -- | -- | -- | -0.215 | 6.02 | -- | -- | -- | -- |
| 81.55 | 0.421 | 8.32 | -0.096 | -- | -1.08 | -- | -- | -0.107 | -- | 24.21 | 403 | -- | -- |
| 53.53 | 0.341 | 8.29 | -- | 1.03 | -0.552 | -- | -- | -0.0424 | 5.94 | 10.3 | 11104 | -- | -- |
| 113.2 | 0.497 | 8.35 | -0.266 | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
| 61.53 | 0.367 | 8.32 | -- | 1.02 | -- | -- | -- | -0.182 | 6.03 | -- | -- | -- | -- |
| 81.57 | 0.421 | 8.32 | -- | -- | -1.07 | -- | -- | -0.0711 | -- | 24.18 | 388 | -- | -- |
| 115.06 | 0.501 | 8.34 | -- | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.22 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 45.30 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 3 | 45.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 4 | 45.34 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 5 | 45.39 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 7 | 45.43 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 8 | 45.50 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 10 | 45.55 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 12 | 45.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 13 | 45.58 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 14 | 45.60 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 16 | 45.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 17 | 45.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 18 | 45.64 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 21 | 45.66 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 22 | 45.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 23 | 45.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 26 | 45.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 31 | 45.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 38 | 45.73 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 39 | 45.74 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 53 | 45.80 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 55 | 45.81 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 64 | 45.95 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 65 | 45.96 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 67 | 45.97 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 69 | 45.98 | wind | 9 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 70 | 45.99 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 75 | 46.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 80 | 46.03 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 82 | 46.04 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 15 |
| 83 | 46.04 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 84 | 46.05 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 89 | 46.08 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 94 | 46.10 | wind | 3 | 43200 | > th | dose independent | sin | 23 | NA |
| 103 | 46.14 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 108 | 46.15 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 6 |
| 114 | 46.17 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 8 |
| 117 | 46.18 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 123 | 46.19 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 134 | 46.21 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 135 | 46.21 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 16 |
| 138 | 46.21 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 144 | 46.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 152 | 46.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 155 | 46.23 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 15 |
| 160 | 46.24 | wind | 5 | 43200 | < th | dose dependent | sin | 22 | NA |
| 162 | 46.24 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 13 |
| 165 | 46.25 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 168 | 46.25 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 170 | 46.26 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 173 | 46.27 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 176 | 46.27 | humidity | 80 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 179 | 46.28 | wind | 3 | 43200 | < th | dose independent | sin | 0 | NA |
| 183 | 46.28 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 18 |
| 220 | 46.31 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 243 | 46.33 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 11 |
| 264 | 46.35 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 14 |
| 296 | 46.38 | wind | 1 | 43200 | > th | dose dependent | sin | 21 | NA |
| 342 | 46.42 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 357 | 46.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 19 |
| 378 | 46.44 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 428 | 46.47 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 438 | 46.48 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 474 | 46.51 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 492 | 46.52 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 508 | 46.53 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 551 | 46.57 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 15 |
| 616 | 46.61 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 636 | 46.61 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 20 |
| 679 | 46.65 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 732 | 46.68 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 751 | 46.69 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 752 | 46.69 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 801 | 46.72 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 816 | 46.73 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 836 | 46.73 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 20 |
| 848 | 46.73 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 934 | 46.79 | wind | 3 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 962 | 46.80 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 968 | 46.80 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |