Os01g0561500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0561500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.86 | 0.322 | 9.64 | -0.0146 | 0.156 | -0.441 | -0.243 | 8.92 | -0.209 | 1.88 | 31.4 | 4020 | -- | -- |
| 51.29 | 0.334 | 9.87 | -1.3 | 0.298 | 0.555 | -0.312 | -- | -0.548 | 0.409 | 32.97 | 12948 | -- | -- |
| 47.08 | 0.32 | 9.64 | -0.012 | 0.156 | -0.442 | -- | 8.88 | -0.209 | 1.99 | 31.4 | 4028 | -- | -- |
| 49.88 | 0.329 | 9.89 | -1.39 | 0.255 | 0.617 | -- | -- | -0.569 | 1.99 | 33 | 13131 | -- | -- |
| 48.54 | 0.324 | 9.64 | -0.0147 | -- | -0.415 | -- | 8.87 | -0.201 | -- | 31.5 | 4001 | -- | -- |
| 64.07 | 0.375 | 9.82 | -1.17 | 0.209 | -- | -0.129 | -- | -0.308 | 2.04 | -- | -- | -- | -- |
| 64.14 | 0.375 | 9.82 | -1.16 | 0.209 | -- | -- | -- | -0.307 | 2.09 | -- | -- | -- | -- |
| 51.76 | 0.335 | 9.88 | -1.4 | -- | 0.628 | -- | -- | -0.579 | -- | 33.15 | 13012 | -- | -- |
| 96.73 | 0.458 | 9.82 | -- | 0.228 | 0.268 | -- | -- | -0.301 | 2.65 | 33.1 | 13170 | -- | -- |
| 66.76 | 0.382 | 9.81 | -1.15 | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
| 99.73 | 0.467 | 9.79 | -- | 0.187 | -- | -- | -- | -0.178 | 1.95 | -- | -- | -- | -- |
| 79.09 | 0.414 | 9.8 | -- | -- | -0.622 | -- | -- | -0.242 | -- | 35.15 | 47520 | -- | -- |
| 101.85 | 0.471 | 9.78 | -- | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.09 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 18 | 46.43 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 20 | 46.58 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 26 | 46.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 30 | 46.70 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 33 | 46.70 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 43 | 46.71 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 130 | 46.95 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 147 | 46.98 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 153 | 46.99 | temperature | 30 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 191 | 47.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 362 | 47.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 367 | 47.30 | temperature | 30 | 4320 | > th | dose dependent | sin | 5 | NA |
| 476 | 47.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 597 | 47.54 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 598 | 47.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 2 |
| 877 | 47.85 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 9 |
| 885 | 47.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 908 | 47.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 913 | 47.92 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 988 | 47.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 996 | 47.99 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |