Os01g0559900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0559900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.79 | 0.486 | 15.1 | -0.906 | 1.48 | 1.86 | -0.0787 | -4.16 | -0.00844 | 14.6 | 21.73 | 1383 | -- | -- |
| 118.03 | 0.506 | 14.9 | 0.19 | 1.4 | 1.93 | 0.00584 | -- | 0.283 | 14 | 17.97 | 2111 | -- | -- |
| 106.81 | 0.481 | 15.1 | -0.903 | 1.48 | 1.86 | -- | -4.14 | -0.00715 | 14.6 | 21.7 | 1378 | -- | -- |
| 117.82 | 0.506 | 14.9 | 0.128 | 1.43 | 2.22 | -- | -- | 0.248 | 14 | 14.6 | 2152 | -- | -- |
| 123.86 | 0.518 | 15 | -0.196 | -- | 2.97 | -- | -2.83 | 0.0774 | -- | 18.62 | 18 | -- | -- |
| 203.82 | 0.669 | 14.8 | 0.924 | 1.32 | -- | -0.0377 | -- | 0.709 | 14.6 | -- | -- | -- | -- |
| 203.83 | 0.669 | 14.8 | 0.924 | 1.32 | -- | -- | -- | 0.709 | 14.6 | -- | -- | -- | -- |
| 131.47 | 0.534 | 14.9 | 0.258 | -- | 3 | -- | -- | 0.208 | -- | 17.69 | 22 | -- | -- |
| 118.22 | 0.506 | 14.9 | -- | 1.42 | 2.26 | -- | -- | 0.247 | 14 | 14 | 2141 | -- | -- |
| 305.77 | 0.817 | 14.8 | 0.867 | -- | -- | -- | -- | 0.676 | -- | -- | -- | -- | -- |
| 226.31 | 0.704 | 14.9 | -- | 1.3 | -- | -- | -- | 0.606 | 14.6 | -- | -- | -- | -- |
| 133.11 | 0.537 | 14.9 | -- | -- | 3.1 | -- | -- | 0.177 | -- | 17.49 | 22 | -- | -- |
| 325.61 | 0.842 | 14.9 | -- | -- | -- | -- | -- | 0.579 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 2 | 103.28 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 5 | 103.53 | wind | 5 | 43200 | > th | dose dependent | sin | 21 | NA |
| 17 | 103.90 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 20 | 103.97 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 23 | 104.04 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 30 | 104.14 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 46 | 104.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 51 | 104.41 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 60 | 104.51 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 70 | 104.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 72 | 104.63 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 74 | 104.64 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 93 | 104.76 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 18 |
| 97 | 104.81 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 121 | 104.99 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 125 | 105.01 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 151 | 105.12 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 161 | 105.16 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 169 | 105.22 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 244 | 105.58 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 321 | 106.09 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 479 | 106.68 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 492 | 106.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 598 | 107.07 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 619 | 107.12 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 636 | 107.18 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 681 | 107.33 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 724 | 107.48 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 753 | 107.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 896 | 108.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 914 | 108.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 976 | 108.57 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |