Os01g0557400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os01g0557400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.51 | 0.303 | 7.62 | 2.27 | 0.501 | 0.779 | 0.182 | 1.88 | 0.382 | 23.5 | 20.2 | 1559 | -- | -- |
| 47.19 | 0.32 | 7.68 | 1.95 | 0.515 | 0.452 | 0.221 | -- | 0.293 | 23.1 | 21.8 | 2820 | -- | -- |
| 41.53 | 0.3 | 7.61 | 2.29 | 0.5 | 0.754 | -- | 1.87 | 0.387 | 23.6 | 20.42 | 1720 | -- | -- |
| 47.3 | 0.32 | 7.68 | 1.93 | 0.482 | 0.457 | -- | -- | 0.286 | 23.4 | 21.74 | 2743 | -- | -- |
| 56.11 | 0.349 | 7.6 | 2.25 | -- | 0.877 | -- | 1.9 | 0.384 | -- | 20.1 | 1165 | -- | -- |
| 53.04 | 0.341 | 7.64 | 2.16 | 0.51 | -- | 0.227 | -- | 0.425 | 23.5 | -- | -- | -- | -- |
| 53.26 | 0.342 | 7.65 | 2.15 | 0.509 | -- | -- | -- | 0.424 | 23.6 | -- | -- | -- | -- |
| 56.33 | 0.35 | 7.71 | 2.11 | -- | 0.688 | -- | -- | 0.214 | -- | 25.1 | 913 | -- | -- |
| 66.47 | 0.38 | 7.79 | -- | 0.487 | 1.63 | -- | -- | -0.218 | 23.5 | 18.61 | 47520 | -- | -- |
| 69.52 | 0.39 | 7.63 | 2.16 | -- | -- | -- | -- | 0.429 | -- | -- | -- | -- | -- |
| 175.12 | 0.619 | 7.7 | -- | 0.534 | -- | -- | -- | 0.184 | 23.8 | -- | -- | -- | -- |
| 80.81 | 0.419 | 7.79 | -- | -- | 1.63 | -- | -- | -0.25 | -- | 19.38 | 47520 | -- | -- |
| 193.07 | 0.649 | 7.69 | -- | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 3 | 40.96 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 8 | 41.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 11 |
| 10 | 41.09 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 15 | 41.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 18 |
| 26 | 41.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 28 | 41.31 | temperature | 20 | 1440 | > th | dose independent | sin | 22 | NA |
| 64 | 41.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 68 | 41.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 73 | 41.53 | temperature | 20 | 1440 | < th | dose independent | sin | 22 | NA |
| 81 | 41.54 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 84 | 41.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 99 | 41.58 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 101 | 41.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 105 | 41.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 111 | 41.60 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 120 | 41.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 143 | 41.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 150 | 41.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 16 |
| 151 | 41.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 217 | 41.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 221 | 41.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 224 | 41.71 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 240 | 41.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 255 | 41.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 268 | 41.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 445 | 41.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 549 | 42.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 21 |
| 550 | 42.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 21 |
| 595 | 42.20 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 598 | 42.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 648 | 42.26 | temperature | 25 | 1440 | < th | dose dependent | sin | 2 | NA |
| 692 | 42.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 796 | 42.46 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 838 | 42.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 13 |