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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0556700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Dicarboxylate transporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.4 (0.0379) R2 : 0.198
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.25 (0.144) R2dE : 0.153 R2E : 0.181
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.217 (0.084) R2dN8 : 0.0171 R2N8 : 0.0455
σ : 0.701
deviance : 226.35
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 10.62
memory length : 7110
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.84 0.659 16.4 0.0104 1.15 1.4 1.68 -2.49 0.315 6.55 24.41 619 -- --
198.52 0.656 16.3 0.396 1.12 1.2 2.15 -- 0.428 6.61 24.5 611 -- --
202.31 0.662 16.4 -0.109 1.19 1.46 -- -3.45 0.273 6.16 24.37 595 -- --
208.73 0.673 16.3 0.467 1.08 1.05 -- -- 0.432 6.11 24.34 587 -- --
227.16 0.702 16.4 -0.408 -- 1.11 -- -2.94 0.297 -- 23.69 4274 -- --
224.65 0.703 16.3 0.665 0.611 -- 1.61 -- 0.546 6.48 -- -- -- --
229.53 0.709 16.3 0.682 0.642 -- -- -- 0.538 5.53 -- -- -- --
226.03 0.7 16.4 0.195 -- 1.08 -- -- 0.33 -- 16.44 4265 -- --
213.08 0.684 16.4 -- 1.09 1.3 -- -- 0.3 4.27 23.17 610 -- --
250.96 0.74 16.3 0.703 -- -- -- -- 0.554 -- -- -- -- --
241.77 0.727 16.3 -- 0.653 -- -- -- 0.463 5.48 -- -- -- --
226.35 0.701 16.4 -- -- 1.25 -- -- 0.217 -- 10.62 7110 -- --
263.99 0.758 16.3 -- -- -- -- -- 0.476 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.04 temperature 10 720 > th dose dependent rect. 9 8
3 190.80 temperature 15 720 > th dose dependent rect. 7 10
12 191.71 temperature 10 270 > th dose dependent rect. 7 15
14 191.79 wind 1 10 < th dose dependent rect. 4 1
21 192.01 temperature 25 720 > th dose dependent rect. 24 17
38 192.43 temperature 30 720 < th dose dependent rect. 8 7
48 192.60 temperature 10 720 > th dose dependent sin 23 NA
49 192.61 temperature 30 720 < th dose dependent rect. 7 10
56 192.69 temperature 30 720 < th dose dependent rect. 6 12
63 192.75 temperature 20 720 > th dose dependent sin 0 NA
82 193.05 temperature 30 720 < th dose dependent rect. 4 15
98 193.22 temperature 30 720 < th dose dependent sin 0 NA
106 193.36 temperature 25 720 > th dose dependent sin 3 NA
109 193.38 wind 1 10 < th dose dependent rect. 2 3
119 193.53 temperature 25 720 < th dose independent rect. 3 16
163 193.97 temperature 25 720 < th dose independent sin 1 NA
180 194.14 wind 1 10 < th dose dependent rect. 4 5
194 194.34 wind 1 10 < th dose dependent rect. 4 8
221 194.53 temperature 25 720 < th dose independent rect. 6 12
231 194.62 radiation 1 720 < th dose dependent rect. 4 14
236 194.67 temperature 30 720 < th dose independent rect. 10 5
258 195.02 temperature 30 720 < th dose independent rect. 9 7
269 195.13 temperature 30 270 < th dose independent rect. 11 7
279 195.21 wind 1 10 < th dose dependent rect. 24 5
298 195.33 temperature 30 270 < th dose dependent rect. 10 10
300 195.35 wind 1 10 < th dose dependent rect. 2 7
307 195.42 wind 1 10 < th dose dependent rect. 2 10
324 195.51 temperature 25 720 > th dose independent rect. 6 13
386 195.89 temperature 15 30 > th dose dependent rect. 5 23
437 196.26 temperature 30 720 < th dose independent rect. 19 22
471 196.45 wind 1 10 < th dose dependent rect. 4 14
478 196.47 wind 1 10 < th dose dependent rect. 4 12
485 196.50 temperature 25 720 > th dose independent sin 1 NA
502 196.63 temperature 30 720 < th dose independent rect. 11 2
504 196.64 temperature 15 270 > th dose dependent rect. 15 9
564 197.01 wind 1 10 < th dose dependent rect. 24 9
591 197.15 temperature 30 720 < th dose independent rect. 24 15
594 197.17 wind 1 10 < th dose dependent sin 4 NA
599 197.19 temperature 30 10 < th dose dependent rect. 11 9
634 197.37 temperature 30 270 < th dose independent rect. 11 18
646 197.42 wind 1 10 < th dose dependent rect. 2 16
657 197.45 wind 1 10 < th dose dependent rect. 2 14
667 197.50 temperature 30 720 < th dose independent rect. 21 17
734 197.73 radiation 1 720 < th dose independent rect. 3 15
772 197.86 temperature 30 720 > th dose independent rect. 10 6
823 198.06 temperature 20 30 > th dose dependent rect. 7 21
867 198.28 radiation 1 720 < th dose dependent sin 2 NA
900 198.39 temperature 25 270 > th dose dependent rect. 15 20
901 198.40 wind 1 10 < th dose dependent rect. 24 18
912 198.43 wind 1 10 < th dose dependent rect. 24 16
951 198.56 radiation 40 14400 < th dose dependent rect. 20 9
959 198.60 temperature 25 720 > th dose dependent no NA NA
960 198.60 temperature 25 720 > th dose dependent rect. 6 23