Os01g0555400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0555400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.69 | 0.677 | 4.2 | 0.963 | 1.2 | 1.71 | 0.497 | 0.811 | -0.406 | 18.8 | 22.65 | 157 | -- | -- |
| 208.1 | 0.672 | 4.21 | 0.84 | 1.18 | 1.78 | 0.541 | -- | -0.442 | 18.7 | 22.61 | 166 | -- | -- |
| 208.26 | 0.672 | 4.19 | 0.996 | 1.18 | 1.69 | -- | 1.07 | -0.39 | 18.8 | 22.71 | 171 | -- | -- |
| 208.94 | 0.673 | 4.21 | 0.813 | 1.18 | 1.8 | -- | -- | -0.449 | 18.8 | 22.66 | 159 | -- | -- |
| 250.02 | 0.736 | 4.19 | 0.771 | -- | 2.51 | -- | 0.593 | -0.485 | -- | 23.74 | 313 | -- | -- |
| 260.15 | 0.756 | 4.16 | 1.19 | 1.8 | -- | 1.28 | -- | -0.185 | 17.8 | -- | -- | -- | -- |
| 264.18 | 0.761 | 4.16 | 1.18 | 1.81 | -- | -- | -- | -0.18 | 17.8 | -- | -- | -- | -- |
| 249.99 | 0.736 | 4.2 | 0.68 | -- | 2.53 | -- | -- | -0.516 | -- | 23.71 | 310 | -- | -- |
| 225.15 | 0.699 | 4.24 | -- | 1.09 | 2.04 | -- | -- | -0.578 | 19 | 22.24 | 175 | -- | -- |
| 433.24 | 0.973 | 4.13 | 1.13 | -- | -- | -- | -- | -0.223 | -- | -- | -- | -- | -- |
| 301.15 | 0.812 | 4.19 | -- | 1.79 | -- | -- | -- | -0.312 | 17.8 | -- | -- | -- | -- |
| 261.56 | 0.753 | 4.22 | -- | -- | 2.65 | -- | -- | -0.624 | -- | 23.42 | 314 | -- | -- |
| 466.82 | 1.01 | 4.16 | -- | -- | -- | -- | -- | -0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 209.52 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 2 | 209.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 9 | 210.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 23 | 211.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 24 | 211.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 34 | 212.12 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 44 | 212.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 51 | 212.83 | temperature | 30 | 90 | < th | dose independent | rect. | 16 | 23 |
| 55 | 213.02 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 23 |
| 63 | 213.23 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 68 | 213.36 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 81 | 213.73 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 167 | 214.89 | humidity | 60 | 90 | < th | dose independent | rect. | 12 | 7 |
| 362 | 216.17 | temperature | 20 | 30 | > th | dose dependent | sin | 19 | NA |
| 363 | 216.18 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 21 |
| 391 | 216.32 | temperature | 20 | 270 | > th | dose dependent | sin | 23 | NA |
| 444 | 216.62 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 13 |
| 568 | 217.23 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 11 | 6 |
| 605 | 217.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 652 | 217.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 16 |
| 727 | 218.07 | temperature | 25 | 720 | > th | dose dependent | sin | 6 | NA |
| 859 | 218.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 879 | 218.96 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 23 |
| 884 | 219.01 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 22 |
| 950 | 219.40 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 968 | 219.54 | humidity | 70 | 270 | < th | dose dependent | rect. | 12 | 4 |