Os01g0555200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Asp/Glu racemase family protein.
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Os01g0555200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Asp/Glu racemase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.59 | 0.571 | 10.2 | 0.34 | 0.12 | 3.06 | 1.12 | -2.39 | 0.544 | 15.1 | 10.54 | 1383 | -- | -- |
| 152.38 | 0.575 | 10.1 | 0.853 | 0.126 | 3.05 | 1.27 | -- | 0.676 | 15.3 | 11.57 | 1386 | -- | -- |
| 150.98 | 0.572 | 10.2 | 0.318 | 0.221 | 3.09 | -- | -2.76 | 0.542 | 12.9 | 10.09 | 1291 | -- | -- |
| 157.44 | 0.584 | 10.1 | 0.895 | 0.163 | 3.04 | -- | -- | 0.692 | 13.4 | 10.9 | 1358 | -- | -- |
| 152.39 | 0.575 | 10.2 | 0.309 | -- | 3.03 | -- | -2.64 | 0.538 | -- | 10.74 | 1407 | -- | -- |
| 308.64 | 0.824 | 9.96 | 1.83 | 0.0902 | -- | -1.24 | -- | 1.24 | 3.95 | -- | -- | -- | -- |
| 313.12 | 0.829 | 9.95 | 1.85 | 0.0853 | -- | -- | -- | 1.24 | 4.57 | -- | -- | -- | -- |
| 158.23 | 0.586 | 10.1 | 0.889 | -- | 3 | -- | -- | 0.691 | -- | 10.12 | 1429 | -- | -- |
| 175.6 | 0.617 | 10.1 | -- | 0.124 | 3.4 | -- | -- | 0.536 | 13.2 | 12.38 | 1407 | -- | -- |
| 313.5 | 0.827 | 9.95 | 1.85 | -- | -- | -- | -- | 1.25 | -- | -- | -- | -- | -- |
| 402.85 | 0.939 | 10 | -- | 0.12 | -- | -- | -- | 1.04 | 4.18 | -- | -- | -- | -- |
| 176.2 | 0.618 | 10.1 | -- | -- | 3.38 | -- | -- | 0.535 | -- | -0.1254 | 1449 | -- | -- |
| 403.64 | 0.938 | 10 | -- | -- | -- | -- | -- | 1.04 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 88 | 146.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 105 | 146.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 135 | 147.38 | temperature | 10 | 1440 | > th | dose dependent | sin | 1 | NA |
| 172 | 147.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 178 | 147.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 180 | 147.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 184 | 147.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 190 | 147.96 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 196 | 147.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 5 |
| 217 | 148.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 220 | 148.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 246 | 148.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 304 | 148.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 352 | 148.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 530 | 150.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 705 | 151.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 791 | 152.33 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 795 | 152.34 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 845 | 152.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 23 |