Os01g0553600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0553600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.41 | 0.317 | 10.2 | -1.43 | 0.596 | -0.325 | -0.221 | -0.0297 | -0.331 | 22.2 | 24.3 | 1152 | -- | -- |
| 45.42 | 0.314 | 10.2 | -1.44 | 0.596 | -0.327 | -0.221 | -- | -0.334 | 22.2 | 24.3 | 1152 | -- | -- |
| 44.69 | 0.311 | 10.2 | -1.5 | 0.585 | -0.316 | -- | 0.177 | -0.333 | 22.6 | 22.7 | 738 | -- | -- |
| 44.64 | 0.311 | 10.2 | -1.43 | 0.575 | -0.326 | -- | -- | -0.323 | 22.7 | 22.7 | 695 | -- | -- |
| 63.31 | 0.371 | 10.3 | -1.64 | -- | -0.442 | -- | 0.882 | -0.444 | -- | 24.6 | 788 | -- | -- |
| 49.38 | 0.329 | 10.2 | -1.32 | 0.64 | -- | -0.16 | -- | -0.202 | 22.6 | -- | -- | -- | -- |
| 49.49 | 0.329 | 10.2 | -1.32 | 0.641 | -- | -- | -- | -0.202 | 22.6 | -- | -- | -- | -- |
| 60.96 | 0.364 | 10.2 | -1.49 | -- | -0.553 | -- | -- | -0.415 | -- | 24.6 | 790 | -- | -- |
| 93.44 | 0.45 | 10.1 | -- | 0.73 | 0.261 | -- | -- | -0.0103 | 22.1 | 27.5 | 717 | -- | -- |
| 74.74 | 0.404 | 10.2 | -1.3 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 95.18 | 0.456 | 10.1 | -- | 0.632 | -- | -- | -- | -0.0551 | 22.4 | -- | -- | -- | -- |
| 90.78 | 0.444 | 10.1 | -- | -- | 0.842 | -- | -- | 0.139 | -- | 18.59 | 47520 | -- | -- |
| 119.66 | 0.511 | 10.1 | -- | -- | -- | -- | -- | -0.0539 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.08 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 14 | 42.68 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 16 | 42.71 | temperature | 25.0 | 270 | < th | dose independent | sin | 6 | NA |
| 17 | 42.71 | temperature | 10.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 53 | 43.21 | temperature | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 89 | 43.56 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 111 | 43.75 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 12 |
| 114 | 43.76 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 14 |
| 118 | 43.79 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 3 |
| 121 | 43.82 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 126 | 43.87 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 129 | 43.89 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 216 | 44.29 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 234 | 44.37 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 8 |
| 320 | 44.61 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 4 | 17 |
| 327 | 44.63 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 336 | 44.66 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 11 |
| 387 | 44.77 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 9 | 7 |
| 411 | 44.82 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 9 | 22 |
| 438 | 44.89 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 17 | 15 |
| 441 | 44.90 | wind | 5.0 | 720 | < th | dose independent | rect. | 23 | 10 |
| 459 | 44.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 10 |
| 488 | 44.97 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 521 | 45.03 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 534 | 45.04 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 558 | 45.08 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 11 | 10 |
| 560 | 45.08 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 9 | 14 |
| 577 | 45.10 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 14 | 16 |
| 625 | 45.16 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 19 | 2 |
| 629 | 45.16 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 3 | 20 |
| 648 | 45.18 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 1 | 22 |
| 658 | 45.19 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 699 | 45.23 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 712 | 45.25 | temperature | 25.0 | 90 | > th | dose independent | rect. | 7 | 8 |
| 715 | 45.25 | radiation | 40.0 | 720 | < th | dose independent | rect. | 17 | 16 |
| 722 | 45.26 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 732 | 45.27 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 18 | 11 |
| 749 | 45.29 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 788 | 45.32 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 863 | 45.39 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 2 |
| 874 | 45.40 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 11 | 19 |
| 884 | 45.40 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 891 | 45.41 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 9 | 12 |
| 899 | 45.42 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 940 | 45.45 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 955 | 45.47 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 957 | 45.47 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 973 | 45.47 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 20 |
| 974 | 45.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 979 | 45.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 980 | 45.48 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |