Os01g0553000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0553000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 350.37 | 0.879 | 8.39 | 1.98 | 0.825 | -1.93 | -1.39 | -0.872 | 0.0816 | 1.35 | 22.07 | 1023 | -- | -- |
| 352.37 | 0.874 | 8.37 | 2.22 | 0.811 | -1.88 | -1.46 | -- | 0.128 | 1.19 | 22.2 | 1023 | -- | -- |
| 357.9 | 0.881 | 8.38 | 2 | 0.825 | -1.94 | -- | -0.995 | 0.0943 | 1.45 | 22 | 1013 | -- | -- |
| 362.03 | 0.886 | 8.35 | 2.28 | 0.822 | -1.88 | -- | -- | 0.15 | 1.49 | 22.19 | 1020 | -- | -- |
| 394.02 | 0.924 | 8.38 | 2.01 | -- | -1.88 | -- | -0.992 | 0.0857 | -- | 22.1 | 1477 | -- | -- |
| 496.01 | 1.04 | 8.49 | 1.58 | 0.563 | -- | -1.47 | -- | -0.474 | 1.78 | -- | -- | -- | -- |
| 503.9 | 1.05 | 8.49 | 1.62 | 0.579 | -- | -- | -- | -0.468 | 2.45 | -- | -- | -- | -- |
| 396.25 | 0.927 | 8.34 | 2.34 | -- | -1.87 | -- | -- | 0.167 | -- | 22.15 | 1479 | -- | -- |
| 484.58 | 1.03 | 8.44 | -- | 0.811 | -1.37 | -- | -- | -0.226 | 1.52 | 22.37 | 916 | -- | -- |
| 523.67 | 1.07 | 8.48 | 1.65 | -- | -- | -- | -- | -0.453 | -- | -- | -- | -- | -- |
| 573.47 | 1.12 | 8.53 | -- | 0.61 | -- | -- | -- | -0.649 | 2.49 | -- | -- | -- | -- |
| 521.85 | 1.06 | 8.44 | -- | -- | -1.19 | -- | -- | -0.273 | -- | 22.36 | 682 | -- | -- |
| 595.41 | 1.14 | 8.52 | -- | -- | -- | -- | -- | -0.636 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 356.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 13 | 359.48 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 20 | 360.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 17 |
| 31 | 360.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 42 | 361.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 61 | 361.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 64 | 362.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 80 | 362.35 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 103 | 363.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 159 | 365.60 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 191 | 367.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 208 | 367.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 213 | 367.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 220 | 368.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 228 | 368.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 247 | 368.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 273 | 369.44 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 294 | 369.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 411 | 372.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 424 | 372.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 431 | 372.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 437 | 372.60 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 456 | 372.94 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 469 | 373.14 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 498 | 373.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 576 | 374.56 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 611 | 374.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 818 | 377.16 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 832 | 377.29 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 906 | 378.15 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 10 |
| 916 | 378.31 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 923 | 378.37 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 971 | 378.90 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |