Os01g0552500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0552500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.09 | 0.388 | 8.5 | -1.85 | 0.675 | -2.01 | 0.729 | -0.554 | -0.0896 | 1.81 | 27.8 | 12 | -- | -- |
| 68.45 | 0.385 | 8.51 | -1.95 | 0.669 | -1.98 | 0.515 | -- | -0.115 | 1.82 | 27.75 | 12 | -- | -- |
| 69.56 | 0.388 | 8.51 | -1.94 | 0.661 | -1.96 | -- | 0.00959 | -0.104 | 1.7 | 27.71 | 12 | -- | -- |
| 69.52 | 0.388 | 8.51 | -1.96 | 0.658 | -1.97 | -- | -- | -0.113 | 1.8 | 27.73 | 11 | -- | -- |
| 81.14 | 0.42 | 8.48 | -1.87 | -- | -1.76 | -- | -0.411 | -0.0108 | -- | 24.47 | 299 | -- | -- |
| 124.46 | 0.523 | 8.41 | -1.47 | 0.0662 | -- | 0.358 | -- | 0.319 | 23.8 | -- | -- | -- | -- |
| 125.01 | 0.524 | 8.41 | -1.48 | 0.0659 | -- | -- | -- | 0.318 | 23.1 | -- | -- | -- | -- |
| 76.13 | 0.406 | 8.49 | -2.09 | -- | -1.81 | -- | -- | -0.0623 | -- | 27.7 | 1481 | -- | -- |
| 160.34 | 0.593 | 8.43 | -- | 0.384 | -1.19 | -- | -- | 0.257 | 1.44 | 27.61 | 6 | -- | -- |
| 125.29 | 0.523 | 8.41 | -1.48 | -- | -- | -- | -- | 0.319 | -- | -- | -- | -- | -- |
| 182.89 | 0.633 | 8.38 | -- | 0.0581 | -- | -- | -- | 0.483 | 21.4 | -- | -- | -- | -- |
| 165.85 | 0.602 | 8.41 | -- | -- | -0.935 | -- | -- | 0.312 | -- | 25.68 | 5 | -- | -- |
| 183.08 | 0.632 | 8.37 | -- | -- | -- | -- | -- | 0.483 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 2 | 69.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 3 | 70.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 4 | 70.07 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 5 | 70.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 6 | 70.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 9 | 70.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 17 | 71.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 18 | 71.82 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 19 | 72.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 22 | 72.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 52 | 73.53 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 53 | 73.57 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 70 | 73.93 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 123 | 75.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 144 | 75.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 175 | 75.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 182 | 75.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 185 | 75.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 186 | 75.71 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 195 | 75.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 198 | 75.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 370 | 76.14 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 395 | 76.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 417 | 76.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 424 | 76.25 | temperature | 10 | 1440 | > th | dose dependent | sin | 6 | NA |
| 425 | 76.25 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 441 | 76.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 456 | 76.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 458 | 76.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 463 | 76.30 | temperature | 30 | 1440 | < th | dose dependent | sin | 5 | NA |
| 480 | 76.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 500 | 76.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 590 | 76.44 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 638 | 76.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 652 | 76.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 692 | 76.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 737 | 76.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 917 | 76.83 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 963 | 76.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |