Os01g0552100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0552100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.63 | 0.307 | 10.7 | -0.992 | 0.245 | -0.0818 | -0.501 | -1.12 | -0.645 | 10.8 | 1013 | 15104 | -- | -- |
| 46.25 | 0.317 | 10.8 | -1.18 | 0.248 | 0.203 | -0.512 | -- | -0.672 | 11.2 | 1017 | 38560 | -- | -- |
| 43.63 | 0.308 | 10.7 | -1.02 | 0.249 | -0.081 | -- | -1.11 | -0.644 | 10.4 | 1013 | 15180 | -- | -- |
| 46.76 | 0.318 | 10.8 | -1.2 | 0.258 | 0.263 | -- | -- | -0.678 | 10.4 | 1017 | 44320 | -- | -- |
| 47.42 | 0.321 | 10.7 | -1.04 | -- | -0.082 | -- | -1.08 | -0.652 | -- | 1013 | 12099 | -- | -- |
| 47.25 | 0.322 | 10.8 | -1.34 | 0.243 | -- | -0.481 | -- | -0.724 | 10.7 | -- | -- | -- | -- |
| 48.17 | 0.325 | 10.8 | -1.36 | 0.249 | -- | -- | -- | -0.727 | 10.3 | -- | -- | -- | -- |
| 50.46 | 0.331 | 10.8 | -1.18 | -- | 0.285 | -- | -- | -0.666 | -- | 1017 | 44341 | -- | -- |
| 62.88 | 0.369 | 10.7 | -- | 0.254 | 1.03 | -- | -- | -0.39 | 10.3 | 1015 | 47081 | -- | -- |
| 51.95 | 0.337 | 10.8 | -1.37 | -- | -- | -- | -- | -0.727 | -- | -- | -- | -- | -- |
| 97.27 | 0.461 | 10.8 | -- | 0.257 | -- | -- | -- | -0.575 | 10.7 | -- | -- | -- | -- |
| 66.6 | 0.38 | 10.7 | -- | -- | 1.04 | -- | -- | -0.393 | -- | 1015 | 47520 | -- | -- |
| 101.36 | 0.47 | 10.8 | -- | -- | -- | -- | -- | -0.576 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.68 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 2 | 41.69 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 3 | 41.71 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 7 | 41.74 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 16 | 41.83 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 23 | 42.00 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 2 |
| 26 | 42.04 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 2 |
| 38 | 42.34 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 42 | 42.44 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 44 | 42.46 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 48 | 42.47 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 62 | 42.50 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 68 | 42.52 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 71 | 42.53 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 112 | 42.59 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 16 | NA |
| 113 | 42.59 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 126 | 42.60 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 16 | NA |
| 153 | 42.61 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 12 | 18 |
| 166 | 42.62 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 21 | 7 |
| 312 | 42.71 | atmosphere | 1015 | 14400 | > th | dose dependent | sin | 11 | NA |
| 318 | 42.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 346 | 42.73 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 20 |
| 360 | 42.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 436 | 42.76 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 548 | 42.79 | atmosphere | 1015 | 14400 | > th | dose independent | no | NA | NA |
| 563 | 42.79 | atmosphere | 1015 | 14400 | > th | dose dependent | no | NA | NA |
| 572 | 42.79 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 4 | 20 |
| 589 | 42.80 | atmosphere | 1015 | 14400 | < th | dose independent | no | NA | NA |
| 599 | 42.80 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 651 | 42.81 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 685 | 42.82 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 701 | 42.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 784 | 42.84 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 809 | 42.85 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 811 | 42.85 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 812 | 42.85 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 813 | 42.85 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 815 | 42.85 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 816 | 42.85 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 817 | 42.85 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 818 | 42.85 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 837 | 42.85 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 851 | 42.86 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 889 | 42.86 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 12 | 21 |
| 894 | 42.86 | atmosphere | 1015 | 14400 | > th | dose dependent | sin | 0 | NA |
| 896 | 42.86 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 899 | 42.86 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 8 | 6 |
| 960 | 42.87 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 1 | 1 |