Os01g0552000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0552000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.61 | 0.469 | 2.52 | 3.9 | 0.134 | -31.6 | -0.338 | 193 | -0.0423 | 3.42 | 994.9 | 1462 | -- | -- |
| 111.53 | 0.496 | 3.17 | 0.0582 | 0.192 | 0.365 | -0.129 | -- | -0.0549 | 4.35 | 996.6 | 878 | -- | -- |
| 99.94 | 0.466 | 2.53 | 3.83 | 0.137 | -31.5 | -- | 192 | -0.0401 | 3.94 | 994.8 | 1503 | -- | -- |
| 102.13 | 0.471 | 3.16 | 0.0187 | 0.184 | 1.41 | -- | -- | 0.0051 | 4.25 | 997.5 | 1359 | -- | -- |
| 100.95 | 0.468 | 2.54 | 3.78 | -- | -31.5 | -- | 192 | -0.0364 | -- | 994.7 | 1512 | -- | -- |
| 111.96 | 0.496 | 3.17 | 0.0677 | 0.186 | -- | -0.155 | -- | -0.059 | 4.25 | -- | -- | -- | -- |
| 112.02 | 0.496 | 3.17 | 0.0694 | 0.187 | -- | -- | -- | -0.0581 | 4.55 | -- | -- | -- | -- |
| 103.39 | 0.474 | 3.17 | 0.0183 | -- | 1.45 | -- | -- | -0.0289 | -- | 997.5 | 1346 | -- | -- |
| 102.01 | 0.47 | 3.16 | -- | 0.172 | 1.4 | -- | -- | -0.0208 | 4.17 | 997.5 | 1353 | -- | -- |
| 113.88 | 0.499 | 3.17 | 0.0767 | -- | -- | -- | -- | -0.0532 | -- | -- | -- | -- | -- |
| 112.14 | 0.495 | 3.17 | -- | 0.188 | -- | -- | -- | -0.0658 | 4.54 | -- | -- | -- | -- |
| 103.4 | 0.474 | 3.17 | -- | -- | 1.46 | -- | -- | -0.0315 | -- | 997.5 | 1346 | -- | -- |
| 114.03 | 0.498 | 3.17 | -- | -- | -- | -- | -- | -0.0617 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.53 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 95.65 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 1 |
| 3 | 95.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 10 | 96.86 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 5 | 6 |
| 22 | 97.36 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 8 | 2 |
| 49 | 98.51 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 52 | 98.54 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 3 |
| 53 | 98.59 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 54 | 98.62 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 59 | 98.75 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 61 | 98.78 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 63 | 98.81 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 3 | 22 |
| 84 | 99.12 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 86 | 99.13 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 7 | 18 |
| 119 | 99.48 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 124 | 99.52 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 125 | 99.53 | atmosphere | 995 | 1440 | > th | dose independent | sin | 17 | NA |
| 127 | 99.54 | atmosphere | 995 | 1440 | > th | dose independent | sin | 7 | NA |
| 140 | 99.59 | atmosphere | 995 | 1440 | < th | dose independent | sin | 9 | NA |
| 141 | 99.59 | atmosphere | 995 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 187 | 99.59 | atmosphere | 995 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 265 | 99.60 | atmosphere | 995 | 1440 | < th | dose dependent | sin | 8 | NA |
| 316 | 99.61 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 342 | 99.61 | atmosphere | 995 | 1440 | < th | dose dependent | no | NA | NA |
| 575 | 99.62 | atmosphere | 995 | 1440 | > th | dose independent | no | NA | NA |
| 584 | 99.62 | atmosphere | 995 | 1440 | < th | dose independent | no | NA | NA |
| 957 | 99.72 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 966 | 99.77 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 972 | 99.83 | atmosphere | 995 | 1440 | > th | dose independent | sin | 12 | NA |
| 976 | 99.83 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 984 | 99.89 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 14 | 15 |
| 994 | 99.96 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 998 | 99.97 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 1000 | 99.98 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 3 | 14 |