Os01g0551400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0551400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.6 | 0.4 | 8.83 | 1.39 | 1.31 | 1.41 | 0.368 | 0.02 | 0.259 | 17.5 | 25.29 | 617 | -- | -- |
| 72.6 | 0.397 | 8.83 | 1.4 | 1.31 | 1.41 | 0.363 | -- | 0.26 | 17.5 | 25.35 | 613 | -- | -- |
| 72.91 | 0.398 | 8.83 | 1.41 | 1.31 | 1.4 | -- | -0.105 | 0.266 | 17.5 | 25.34 | 613 | -- | -- |
| 72.93 | 0.398 | 8.83 | 1.4 | 1.31 | 1.41 | -- | -- | 0.262 | 17.5 | 25.3 | 613 | -- | -- |
| 142.13 | 0.555 | 8.8 | 1.48 | -- | 1.31 | -- | -0.0109 | 0.269 | -- | 27.38 | 2681 | -- | -- |
| 102.06 | 0.474 | 8.89 | 1.01 | 1.19 | -- | 0.35 | -- | -0.0391 | 17 | -- | -- | -- | -- |
| 102.37 | 0.474 | 8.89 | 1.01 | 1.2 | -- | -- | -- | -0.0373 | 17 | -- | -- | -- | -- |
| 142 | 0.555 | 8.8 | 1.54 | -- | 1.36 | -- | -- | 0.289 | -- | 27.42 | 2685 | -- | -- |
| 118 | 0.506 | 8.89 | -- | 1.25 | 0.817 | -- | -- | -0.00391 | 17.3 | 25.1 | 534 | -- | -- |
| 177.71 | 0.623 | 8.88 | 0.965 | -- | -- | -- | -- | -0.068 | -- | -- | -- | -- | -- |
| 129.17 | 0.532 | 8.92 | -- | 1.18 | -- | -- | -- | -0.15 | 17 | -- | -- | -- | -- |
| 185.56 | 0.634 | 8.87 | -- | -- | 0.927 | -- | -- | -0.0395 | -- | 48.32 | 1244 | -- | -- |
| 202.26 | 0.664 | 8.9 | -- | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 6 | 70.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 9 | 71.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 19 | 71.43 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 22 | 71.54 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 50 | 72.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 56 | 72.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 66 | 72.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 10 |
| 82 | 72.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 152 | 72.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 188 | 73.00 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 190 | 73.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 191 | 73.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 193 | 73.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 8 |
| 206 | 73.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 208 | 73.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 8 |
| 272 | 73.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 434 | 73.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 766 | 74.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 780 | 74.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |