Os01g0550200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os01g0550200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.95 | 0.182 | 10.2 | 0.763 | 0.321 | -0.424 | -0.166 | 0.0754 | 0.264 | 16.2 | 79.98 | 1363 | -- | -- |
| 14.96 | 0.18 | 10.2 | 0.758 | 0.321 | -0.419 | -0.169 | -- | 0.264 | 16.2 | 79.99 | 1363 | -- | -- |
| 15.02 | 0.18 | 10.2 | 0.76 | 0.32 | -0.419 | -- | 0.091 | 0.263 | 16.4 | 79.99 | 1356 | -- | -- |
| 15.03 | 0.181 | 10.2 | 0.753 | 0.319 | -0.416 | -- | -- | 0.263 | 16.4 | 79.64 | 1356 | -- | -- |
| 19.91 | 0.208 | 10.2 | 0.768 | -- | -0.499 | -- | 0.25 | 0.269 | -- | 81 | 1240 | -- | -- |
| 17.15 | 0.194 | 10.2 | 0.743 | 0.348 | -- | -0.118 | -- | 0.237 | 16.2 | -- | -- | -- | -- |
| 17.18 | 0.194 | 10.2 | 0.741 | 0.348 | -- | -- | -- | 0.237 | 16.3 | -- | -- | -- | -- |
| 19.96 | 0.208 | 10.2 | 0.741 | -- | -0.502 | -- | -- | 0.261 | -- | 80.47 | 1259 | -- | -- |
| 29.87 | 0.255 | 10.2 | -- | 0.297 | -0.361 | -- | -- | 0.176 | 16.2 | 80.07 | 1347 | -- | -- |
| 23.7 | 0.227 | 10.2 | 0.727 | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
| 31.66 | 0.263 | 10.2 | -- | 0.334 | -- | -- | -- | 0.154 | 16.3 | -- | -- | -- | -- |
| 33.61 | 0.27 | 10.2 | -- | -- | -0.503 | -- | -- | 0.179 | -- | 82 | 1245 | -- | -- |
| 37.66 | 0.286 | 10.2 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.89 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 2 | 14.92 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 3 | 14.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 21 | 21 |
| 6 | 14.93 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 7 | 14.94 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 22 | 14.96 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 21 | 21 |
| 31 | 14.98 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 35 | 14.98 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 52 | 15.01 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 66 | 15.03 | humidity | 80.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 94 | 15.06 | humidity | 80.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 119 | 15.07 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 127 | 15.08 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 133 | 15.08 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 134 | 15.08 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 137 | 15.08 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 138 | 15.08 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 142 | 15.09 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 143 | 15.09 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 152 | 15.09 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 160 | 15.10 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 161 | 15.10 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 181 | 15.10 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 190 | 15.10 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 231 | 15.12 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 234 | 15.12 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 255 | 15.12 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 293 | 15.13 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 340 | 15.15 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 342 | 15.15 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 344 | 15.15 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 345 | 15.16 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 351 | 15.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 369 | 15.16 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 371 | 15.16 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 403 | 15.17 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 18 |
| 407 | 15.18 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 463 | 15.19 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 17 |
| 468 | 15.20 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 501 | 15.21 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 517 | 15.22 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 572 | 15.25 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 589 | 15.26 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 590 | 15.26 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 679 | 15.28 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 689 | 15.29 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 9 | 22 |
| 690 | 15.29 | wind | 3.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 708 | 15.29 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 719 | 15.30 | humidity | 70.0 | 1440 | > th | dose dependent | no | NA | NA |
| 735 | 15.30 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 737 | 15.31 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 865 | 15.34 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 877 | 15.35 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |