Os01g0548600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os01g0548600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 390.41 | 0.928 | 4.88 | 2.3 | 1.41 | -1.81 | 0.188 | 0.495 | 1.04 | 0.0605 | 25 | 1274 | -- | -- |
| 390.61 | 0.92 | 4.88 | 2.22 | 1.43 | -1.77 | 0.237 | -- | 1.03 | 0.0239 | 25 | 1262 | -- | -- |
| 390.52 | 0.92 | 4.88 | 2.33 | 1.41 | -1.81 | -- | 0.637 | 1.05 | 0.0439 | 25.1 | 1274 | -- | -- |
| 390.64 | 0.921 | 4.9 | 2.16 | 1.39 | -1.74 | -- | -- | 0.999 | 0.0644 | 25.1 | 1285 | -- | -- |
| 491.3 | 1.03 | 4.84 | 2.39 | -- | -1.62 | -- | 0.75 | 1.06 | -- | 25.1 | 1525 | -- | -- |
| 503.23 | 1.05 | 4.94 | 1.6 | 1.15 | -- | -0.108 | -- | 0.805 | 23.7 | -- | -- | -- | -- |
| 503.28 | 1.05 | 4.94 | 1.61 | 1.15 | -- | -- | -- | 0.806 | 23.7 | -- | -- | -- | -- |
| 491.27 | 1.03 | 4.87 | 2.18 | -- | -1.54 | -- | -- | 1.01 | -- | 25 | 1531 | -- | -- |
| 494.01 | 1.04 | 5.02 | -- | 1.31 | -1.27 | -- | -- | 0.391 | 24 | 32.24 | 1267 | -- | -- |
| 585.92 | 1.13 | 4.91 | 1.64 | -- | -- | -- | -- | 0.819 | -- | -- | -- | -- | -- |
| 571.29 | 1.12 | 4.98 | -- | 1.17 | -- | -- | -- | 0.627 | 23.7 | -- | -- | -- | -- |
| 599.81 | 1.14 | 5.01 | -- | -- | -1.03 | -- | -- | 0.407 | -- | 31.4 | 1430 | -- | -- |
| 656.76 | 1.2 | 4.96 | -- | -- | -- | -- | -- | 0.637 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 384.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 384.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 3 | 384.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 4 | 385.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 7 | 385.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 35 | 387.64 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 64 | 389.05 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 82 | 389.69 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 97 | 390.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 114 | 390.46 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 153 | 390.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 167 | 391.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 173 | 391.19 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 174 | 391.20 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 261 | 392.07 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 263 | 392.10 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 7 |
| 315 | 392.77 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 360 | 393.15 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 387 | 393.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 388 | 393.42 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 392 | 393.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 17 |
| 398 | 393.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 22 |
| 428 | 393.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 21 |
| 454 | 393.72 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 499 | 393.88 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 572 | 394.66 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 606 | 394.96 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 620 | 395.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 623 | 395.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 627 | 395.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 628 | 395.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 632 | 395.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 637 | 395.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 654 | 395.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 658 | 395.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 663 | 395.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 664 | 395.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 677 | 395.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 693 | 395.54 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 720 | 395.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 721 | 395.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 744 | 395.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 749 | 395.62 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 778 | 395.79 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 939 | 396.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 947 | 396.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 970 | 396.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 972 | 396.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 986 | 396.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 987 | 396.48 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 1000 | 396.70 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |