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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0548000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0227) R2 : 0.014
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.122 (0.0477) R2dN8 : 0.0181 R2N8 : 0.014
σ : 0.427
deviance : 83.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.98 0.418 3.01 0.211 0.105 -3.52 -0.2 11.8 0.135 2.29 48.43 252 -- --
81.73 0.424 3.05 0.168 0.081 -0.278 -0.452 -- 0.134 3.46 48.43 252 -- --
79.04 0.414 3.01 0.217 0.107 -4.32 -- 13.7 0.132 1.93 48.13 252 -- --
80.22 0.417 3.03 0.0838 0.0215 1.04 -- -- 0.181 5.27 46 265 -- --
78.8 0.413 2.81 0.742 -- -32.4 -- 82.8 0.142 -- 44.21 210 -- --
81.95 0.424 3.05 0.156 0.0865 -- -0.416 -- 0.135 3.43 -- -- -- --
82.43 0.425 3.05 0.163 0.0881 -- -- -- 0.138 1.89 -- -- -- --
80.12 0.417 3.04 0.115 -- 1.26 -- -- 0.145 -- 47 251 -- --
79.76 0.416 3.05 -- 0.136 1.33 -- -- 0.121 3.63 47 251 -- --
82.9 0.425 3.04 0.167 -- -- -- -- 0.14 -- -- -- -- --
83.13 0.427 3.05 -- 0.0912 -- -- -- 0.12 1.94 -- -- -- --
80.46 0.418 3.05 -- -- 1.33 -- -- 0.132 -- 47 252 -- --
83.63 0.427 3.05 -- -- -- -- -- 0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.27 wind 3.0 10 < th dose dependent rect. 15 1
5 73.88 radiation 1.0 10 < th dose independent rect. 11 5
17 73.91 radiation 1.0 10 < th dose independent rect. 13 3
29 74.02 radiation 1.0 10 < th dose independent rect. 15 1
37 74.07 humidity 90.0 90 > th dose independent rect. 14 1
40 74.07 humidity 90.0 90 > th dose dependent rect. 14 1
63 74.53 radiation 1.0 10 < th dose dependent rect. 11 5
67 74.55 radiation 1.0 10 < th dose dependent rect. 13 3
71 74.57 wind 5.0 30 > th dose dependent rect. 24 8
77 74.66 wind 3.0 10 < th dose independent rect. 15 1
79 74.70 radiation 1.0 10 < th dose dependent rect. 15 1
85 75.04 wind 5.0 30 > th dose independent rect. 24 8
89 75.24 wind 5.0 90 < th dose dependent rect. 15 2
94 75.31 wind 3.0 90 < th dose independent rect. 14 3
95 75.34 radiation 20.0 90 > th dose independent rect. 6 1
109 75.34 radiation 20.0 90 > th dose dependent rect. 6 1
123 75.37 wind 5.0 90 > th dose dependent rect. 5 3
125 75.38 wind 5.0 90 > th dose independent rect. 7 1
129 75.38 wind 5.0 90 > th dose dependent rect. 7 1
130 75.38 radiation 1.0 43200 < th dose dependent rect. 3 1
141 75.63 radiation 10.0 90 < th dose dependent rect. 14 1
142 75.64 wind 3.0 90 < th dose independent rect. 14 1
146 75.67 radiation 10.0 90 < th dose dependent rect. 14 3
147 75.68 temperature 25.0 90 < th dose dependent rect. 14 1
174 75.92 atmosphere 1005.0 90 > th dose dependent rect. 2 1
177 75.96 humidity 90.0 30 > th dose dependent rect. 2 1
185 75.98 temperature 30.0 30 < th dose dependent rect. 2 1
186 75.99 humidity 90.0 10 > th dose independent rect. 2 1
193 76.01 wind 5.0 30 < th dose independent rect. 2 1
196 76.01 temperature 10.0 30 > th dose independent rect. 2 1
198 76.01 temperature 30.0 30 < th dose independent rect. 2 1
199 76.01 humidity 50.0 30 > th dose independent rect. 2 1
202 76.01 atmosphere 995.0 30 > th dose independent rect. 2 1
203 76.01 atmosphere 1010.0 30 < th dose independent rect. 2 1
205 76.01 radiation 1.0 30 < th dose independent rect. 2 1
210 76.01 precipitation 0.1 30 < th dose independent rect. 2 1
211 76.01 temperature 10.0 30 > th dose independent rect. 3 23
212 76.01 humidity 50.0 30 > th dose dependent rect. 2 1
214 76.01 atmosphere 1015.0 30 < th dose dependent rect. 2 1
215 76.01 radiation 1.0 30 < th dose dependent rect. 2 1
220 76.01 precipitation 0.1 30 < th dose dependent rect. 2 1
224 76.02 wind 5.0 30 < th dose dependent rect. 2 1
228 76.02 atmosphere 995.0 30 > th dose dependent rect. 2 1
230 76.03 wind 1.0 30 > th dose independent rect. 2 1
232 76.03 temperature 10.0 30 > th dose dependent rect. 2 1
235 76.04 precipitation 0.1 30 < th dose independent rect. 3 23
241 76.04 precipitation 0.1 30 < th dose dependent rect. 3 23
245 76.05 wind 5.0 10 > th dose independent rect. 2 6
248 76.05 precipitation 0.1 720 < th dose independent rect. 15 8
252 76.05 precipitation 0.1 720 < th dose dependent rect. 15 8
299 76.10 atmosphere 995.0 30 > th dose independent rect. 3 23
302 76.11 wind 5.0 10 > th dose independent rect. 7 1
320 76.15 wind 9.0 30 < th dose independent rect. 3 23
323 76.16 temperature 25.0 90 < th dose dependent rect. 14 3
334 76.20 humidity 50.0 720 > th dose independent rect. 3 8
344 76.27 wind 9.0 1440 < th dose independent rect. 3 1
345 76.27 temperature 10.0 1440 > th dose independent rect. 3 1
348 76.27 temperature 30.0 1440 < th dose independent rect. 3 1
352 76.27 humidity 50.0 1440 > th dose independent rect. 3 1
361 76.27 atmosphere 995.0 1440 > th dose independent rect. 3 1
362 76.27 radiation 1.0 1440 < th dose independent rect. 3 1
382 76.27 temperature 10.0 1440 > th dose independent rect. 4 23
385 76.27 radiation 1.0 1440 < th dose dependent rect. 3 1
399 76.31 temperature 10.0 720 > th dose independent rect. 15 8
400 76.31 temperature 10.0 720 > th dose independent rect. 23 16
403 76.36 temperature 10.0 720 > th dose independent rect. 3 8
404 76.36 atmosphere 995.0 720 > th dose independent rect. 3 8
405 76.36 temperature 10.0 720 > th dose independent rect. 11 16
408 76.39 wind 9.0 720 < th dose independent rect. 3 8
410 76.50 precipitation 0.1 720 < th dose independent rect. 11 16
411 76.50 precipitation 0.1 720 < th dose dependent rect. 11 16
420 76.55 atmosphere 995.0 720 > th dose independent rect. 11 16
421 76.55 atmosphere 995.0 720 > th dose independent rect. 23 16
422 76.57 atmosphere 995.0 720 > th dose independent rect. 15 8
428 76.66 radiation 30.0 30 < th dose dependent rect. 15 1
446 76.85 temperature 25.0 90 < th dose independent rect. 14 3
487 77.02 precipitation 0.1 720 < th dose independent rect. 3 8
492 77.02 precipitation 0.1 720 < th dose dependent rect. 3 8
524 77.22 temperature 25.0 10 < th dose independent rect. 15 1
542 77.27 atmosphere 1015.0 720 < th dose independent rect. 3 8
544 77.27 temperature 10.0 30 > th dose dependent rect. 3 23
550 77.30 humidity 80.0 90 < th dose dependent rect. 6 2
583 77.42 humidity 50.0 30 > th dose independent rect. 3 23
585 77.42 humidity 90.0 90 > th dose dependent rect. 10 6
599 77.47 precipitation 0.1 720 < th dose independent rect. 23 16
602 77.47 precipitation 0.1 720 < th dose dependent rect. 23 16
615 77.51 radiation 40.0 720 < th dose independent rect. 15 8
626 77.56 temperature 30.0 720 < th dose dependent rect. 5 2
632 77.60 radiation 20.0 30 < th dose independent rect. 15 1
688 77.81 temperature 30.0 720 < th dose independent rect. 3 8
703 77.86 precipitation 0.1 270 > th dose independent rect. 13 1
711 77.87 precipitation 0.1 270 > th dose dependent rect. 13 1
725 77.91 temperature 10.0 30 > th dose dependent rect. 3 12
737 77.96 temperature 25.0 270 < th dose independent rect. 12 4
760 78.01 temperature 25.0 10 < th dose dependent rect. 6 12
789 78.10 atmosphere 1000.0 30 > th dose dependent rect. 15 1
799 78.13 humidity 50.0 270 < th dose dependent rect. 14 2
800 78.13 humidity 50.0 270 < th dose dependent rect. 14 4
821 78.14 temperature 10.0 720 > th dose dependent rect. 3 1
836 78.18 humidity 50.0 270 < th dose independent rect. 14 2
840 78.19 humidity 50.0 270 < th dose independent rect. 14 4
882 78.21 wind 1.0 720 > th dose independent rect. 15 8
897 78.22 atmosphere 1000.0 30 > th dose independent rect. 15 1
903 78.22 temperature 20.0 270 < th dose dependent rect. 4 1
908 78.23 humidity 50.0 270 < th dose dependent sin 13 NA
925 78.27 humidity 60.0 720 > th dose dependent rect. 3 1
933 78.29 temperature 20.0 720 < th dose independent rect. 4 3
993 78.34 humidity 50.0 270 < th dose independent sin 13 NA