FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0547400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0501) R2 : 0.0486
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.509 (0.106) R2dN8 : 0.0628 R2N8 : 0.0486
σ : 0.944
deviance : 408.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
384.98 0.922 3.24 -0.366 0.341 0.52 -0.263 0.168 0.686 14.3 25 334 -- --
385.06 0.914 3.24 -0.324 0.338 0.524 -0.329 -- 0.694 14.3 25.01 334 -- --
384.81 0.914 3.24 -0.4 0.302 0.522 -- 0.332 0.668 14.5 25.53 367 -- --
384.95 0.914 3.24 -0.323 0.335 0.558 -- -- 0.687 14.7 25.6 367 -- --
389.65 0.919 3.25 -0.384 -- 0.496 -- 0.161 0.639 -- 25.52 604 -- --
397.45 0.935 3.28 -0.49 0.296 -- 0.283 -- 0.454 9.19 -- -- -- --
397.67 0.934 3.28 -0.479 0.294 -- -- -- 0.455 9.65 -- -- -- --
389.72 0.919 3.25 -0.338 -- 0.506 -- -- 0.643 -- 25.59 607 -- --
387.57 0.917 3.23 -- 0.357 0.592 -- -- 0.734 14.8 25.5 370 -- --
402.78 0.938 3.29 -0.481 -- -- -- -- 0.456 -- -- -- -- --
403.71 0.94 3.27 -- 0.295 -- -- -- 0.509 9.77 -- -- -- --
392.33 0.923 3.24 -- -- 0.619 -- -- 0.703 -- 25.65 826 -- --
408.9 0.944 3.28 -- -- -- -- -- 0.509 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 373.15 temperature 25.0 270 < th dose independent rect. 19 10
5 374.41 temperature 25.0 270 > th dose independent sin 12 NA
6 374.64 temperature 25.0 270 < th dose independent rect. 14 15
7 374.76 temperature 25.0 270 < th dose independent sin 12 NA
17 375.30 temperature 25.0 270 > th dose independent rect. 17 12
21 375.64 temperature 25.0 270 > th dose independent rect. 17 15
138 380.07 temperature 10.0 30 > th dose dependent rect. 13 23
186 381.25 wind 1.0 270 < th dose dependent rect. 21 2
203 381.60 wind 1.0 270 < th dose dependent rect. 16 7
219 381.86 temperature 20.0 270 > th dose dependent rect. 17 16
221 381.88 atmosphere 1005.0 10 > th dose independent rect. 12 6
230 382.00 atmosphere 1005.0 10 > th dose dependent rect. 12 5
240 382.15 wind 1.0 270 < th dose independent rect. 21 2
249 382.24 temperature 20.0 270 > th dose dependent rect. 17 8
252 382.28 temperature 25.0 270 > th dose dependent sin 11 NA
256 382.31 temperature 25.0 270 > th dose dependent rect. 18 12
285 382.71 temperature 30.0 270 < th dose dependent rect. 12 17
291 382.78 temperature 10.0 1440 > th dose independent rect. 13 1
295 382.78 atmosphere 995.0 1440 > th dose independent rect. 13 1
298 382.78 temperature 30.0 270 < th dose independent rect. 2 15
302 382.78 temperature 10.0 1440 > th dose independent rect. 14 23
326 382.97 radiation 20.0 30 > th dose independent rect. 12 1
338 383.06 temperature 15.0 270 > th dose dependent rect. 6 19
339 383.06 wind 3.0 90 < th dose dependent rect. 2 21
369 383.34 temperature 10.0 270 > th dose dependent rect. 5 21
370 383.35 wind 1.0 14400 < th dose dependent rect. 1 2
376 383.41 wind 3.0 90 < th dose dependent rect. 2 19
385 383.46 temperature 25.0 30 > th dose independent rect. 12 1
387 383.48 wind 5.0 30 < th dose independent rect. 12 1
392 383.52 humidity 70.0 30 < th dose independent rect. 12 1
400 383.56 humidity 80.0 30 < th dose dependent rect. 12 1
406 383.61 temperature 15.0 90 > th dose dependent rect. 8 19
412 383.63 humidity 60.0 30 > th dose independent rect. 12 14
414 383.64 atmosphere 1000.0 30 > th dose independent rect. 12 1
421 383.69 radiation 10.0 30 > th dose dependent rect. 12 1
424 383.70 radiation 40.0 30 > th dose independent rect. 12 1
427 383.71 temperature 20.0 30 > th dose dependent rect. 12 1
432 383.72 wind 1.0 30 < th dose dependent rect. 13 13
435 383.73 wind 7.0 30 < th dose dependent rect. 12 1
440 383.76 wind 1.0 270 < th dose independent rect. 19 4
456 383.81 atmosphere 1010.0 30 < th dose independent rect. 12 1
457 383.81 temperature 30.0 270 < th dose independent rect. 23 22
476 383.89 humidity 60.0 30 > th dose independent rect. 12 1
481 383.91 wind 1.0 30 > th dose independent rect. 12 1
493 383.97 temperature 30.0 720 < th dose independent rect. 2 12
496 383.98 atmosphere 995.0 30 > th dose dependent rect. 12 1
504 384.02 temperature 10.0 30 > th dose independent rect. 12 1
509 384.02 precipitation 0.1 30 < th dose independent rect. 12 1
510 384.02 temperature 10.0 30 > th dose independent rect. 13 23
511 384.02 precipitation 0.1 30 < th dose dependent rect. 12 1
514 384.04 wind 1.0 30 < th dose dependent rect. 10 16
536 384.12 wind 1.0 90 > th dose independent rect. 13 23
537 384.13 wind 5.0 90 < th dose dependent rect. 2 17
543 384.17 wind 9.0 30 < th dose independent rect. 13 23
544 384.18 temperature 25.0 4320 > th dose independent rect. 18 10
555 384.21 temperature 20.0 10 > th dose dependent rect. 18 10
566 384.25 radiation 10.0 270 < th dose dependent rect. 14 15
577 384.30 atmosphere 1005.0 30 > th dose independent rect. 12 14
594 384.35 humidity 50.0 270 > th dose dependent rect. 12 17
610 384.41 temperature 30.0 720 < th dose independent rect. 12 1
613 384.41 atmosphere 1015.0 30 < th dose dependent rect. 12 1
643 384.50 temperature 30.0 30 < th dose independent rect. 12 1
645 384.50 atmosphere 1005.0 30 > th dose independent rect. 10 16
650 384.51 humidity 50.0 270 > th dose dependent rect. 11 19
653 384.52 temperature 30.0 90 < th dose independent rect. 11 8
658 384.53 wind 1.0 30 > th dose dependent rect. 12 1
664 384.56 temperature 25.0 4320 < th dose independent rect. 18 11
671 384.59 temperature 25.0 1440 > th dose independent rect. 21 6
690 384.63 humidity 50.0 30 > th dose dependent rect. 12 1
695 384.64 temperature 30.0 270 < th dose independent rect. 9 8
741 384.84 temperature 30.0 270 < th dose independent rect. 1 20
744 384.84 radiation 1.0 720 > th dose dependent rect. 15 4
754 384.84 atmosphere 995.0 10 > th dose dependent rect. 12 14
761 384.87 radiation 10.0 720 > th dose independent rect. 14 17
776 384.92 radiation 1.0 720 > th dose dependent rect. 15 2
787 384.96 temperature 25.0 1440 < th dose independent rect. 21 6
791 384.96 radiation 1.0 720 > th dose dependent rect. 15 16
821 385.05 wind 3.0 90 < th dose independent rect. 2 21
832 385.07 atmosphere 1005.0 10 > th dose independent rect. 10 8
841 385.08 temperature 25.0 4320 > th dose independent rect. 18 14
891 385.20 temperature 25.0 270 > th dose independent rect. 8 21
899 385.22 wind 9.0 30 < th dose dependent rect. 2 14
912 385.25 wind 3.0 90 < th dose independent rect. 2 19
915 385.26 temperature 30.0 90 < th dose independent rect. 23 19
923 385.28 wind 5.0 10 < th dose independent rect. 13 10
931 385.29 temperature 25.0 10 > th dose independent rect. 18 11
954 385.32 radiation 20.0 720 > th dose dependent rect. 15 17
958 385.34 temperature 30.0 720 < th dose independent rect. 5 10
960 385.34 temperature 30.0 720 < th dose independent rect. 23 16