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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0547000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LRR19.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.86 (0.0296) R2 : 0.198
β1 : 0.715 (0.108) R2dD : 0.0795 R2D : -0.0109
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.595 (0.0632) R2dN8 : 0.209 R2N8 : 0.119
σ : 0.555
deviance : 141.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.02 0.508 4.85 0.764 0.385 -0.236 1.22 -1.79 0.597 7.05 25.1 22 -- --
127.28 0.529 4.85 0.701 0.375 -0.152 1.15 -- 0.589 5.55 19.98 5 -- --
120.47 0.511 4.86 0.779 0.386 -0.223 -- -1.63 0.584 6.57 25.22 27 -- --
129.74 0.534 4.85 0.712 0.399 -0.236 -- -- 0.585 6.99 19.98 5 -- --
128.34 0.528 4.86 0.788 -- -0.21 -- -1.6 0.605 -- 25.22 28 -- --
128.67 0.532 4.85 0.704 0.396 -- 1.23 -- 0.591 4.85 -- -- -- --
132.44 0.539 4.85 0.701 0.409 -- -- -- 0.585 5.27 -- -- -- --
137.88 0.549 4.86 0.723 -- -0.227 -- -- 0.591 -- 25.22 28 -- --
142.57 0.556 4.87 -- 0.431 -0.267 -- -- 0.505 7.11 19.98 6 -- --
141.19 0.555 4.86 0.715 -- -- -- -- 0.595 -- -- -- -- --
145.38 0.564 4.87 -- 0.421 -- -- -- 0.507 5.21 -- -- -- --
151.24 0.573 4.88 -- -- -0.208 -- -- 0.51 -- 19.99 5 -- --
154.67 0.581 4.88 -- -- -- -- -- 0.516 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.06 wind 1.0 14400 < th dose independent rect. 24 3
2 113.26 precipitation 0.1 43200 > th dose dependent rect. 19 1
3 113.36 atmosphere 1010.0 14400 < th dose independent rect. 6 1
4 113.37 humidity 90.0 43200 < th dose independent rect. 14 1
5 113.65 wind 1.0 14400 < th dose dependent rect. 24 3
6 113.77 wind 1.0 14400 > th dose independent rect. 24 3
7 113.83 humidity 90.0 43200 < th dose independent rect. 23 1
10 113.99 atmosphere 1010.0 14400 > th dose independent rect. 6 1
12 114.01 wind 1.0 14400 < th dose dependent sin 12 NA
15 114.06 wind 1.0 14400 < th dose dependent rect. 17 16
17 114.15 precipitation 0.1 43200 < th dose independent rect. 19 1
18 114.15 precipitation 0.1 43200 < th dose dependent rect. 19 1
21 114.17 precipitation 0.1 43200 > th dose independent rect. 19 1
24 114.21 wind 1.0 14400 < th dose dependent rect. 14 19
25 114.23 precipitation 0.1 43200 > th dose independent rect. 17 1
30 114.28 wind 1.0 14400 < th dose independent rect. 21 6
33 114.30 humidity 80.0 43200 > th dose independent rect. 6 3
34 114.31 humidity 80.0 43200 < th dose independent rect. 7 2
36 114.32 humidity 80.0 43200 < th dose independent rect. 6 4
39 114.36 precipitation 0.1 43200 < th dose independent rect. 17 1
40 114.36 temperature 25.0 43200 > th dose dependent rect. 3 1
41 114.36 precipitation 0.1 43200 < th dose dependent rect. 17 1
44 114.38 wind 1.0 14400 < th dose dependent rect. 19 14
47 114.42 humidity 90.0 43200 > th dose independent rect. 22 4
51 114.44 humidity 90.0 43200 < th dose independent rect. 12 19
53 114.45 humidity 90.0 43200 < th dose independent rect. 13 14
58 114.46 wind 1.0 14400 > th dose independent rect. 17 19
59 114.49 wind 1.0 14400 < th dose independent rect. 24 1
60 114.49 humidity 90.0 43200 > th dose independent rect. 23 2
71 114.54 humidity 80.0 43200 > th dose dependent rect. 15 10
75 114.55 humidity 90.0 43200 < th dose independent rect. 19 7
77 114.56 humidity 90.0 43200 < th dose independent rect. 22 3
82 114.57 wind 1.0 14400 < th dose dependent rect. 21 12
85 114.58 humidity 90.0 43200 < th dose independent rect. 20 5
116 114.66 wind 1.0 14400 < th dose dependent rect. 21 6
117 114.66 humidity 80.0 43200 > th dose dependent rect. 17 7
121 114.68 humidity 90.0 43200 < th dose independent sin 14 NA
131 114.70 humidity 90.0 43200 > th dose independent rect. 20 6
138 114.71 temperature 25.0 43200 > th dose dependent rect. 23 1
148 114.74 humidity 80.0 43200 > th dose dependent sin 16 NA
149 114.74 temperature 25.0 43200 > th dose dependent rect. 1 4
154 114.75 wind 1.0 14400 < th dose independent rect. 19 8
174 114.79 atmosphere 1000.0 14400 > th dose dependent rect. 8 1
177 114.79 temperature 25.0 43200 > th dose dependent rect. 22 7
205 114.84 wind 1.0 14400 < th dose dependent rect. 21 9
224 114.88 humidity 80.0 43200 > th dose dependent rect. 9 22
238 114.91 humidity 90.0 43200 > th dose dependent rect. 24 1
249 114.93 atmosphere 1010.0 14400 < th dose independent rect. 9 1
251 114.93 humidity 90.0 43200 > th dose independent rect. 13 14
255 114.93 radiation 10.0 43200 < th dose dependent rect. 12 2
278 114.97 wind 1.0 14400 < th dose dependent rect. 19 8
282 114.98 wind 1.0 14400 < th dose independent rect. 17 19
289 114.99 temperature 30.0 43200 > th dose dependent rect. 18 1
306 114.99 wind 1.0 14400 < th dose dependent rect. 4 23
316 115.00 humidity 80.0 43200 > th dose dependent rect. 22 23
321 115.01 humidity 90.0 43200 > th dose independent rect. 13 18
330 115.01 wind 1.0 14400 < th dose dependent rect. 17 22
337 115.02 atmosphere 1015.0 14400 < th dose dependent rect. 9 1
355 115.04 humidity 80.0 43200 > th dose dependent no NA NA
361 115.04 wind 1.0 14400 < th dose dependent rect. 21 23
362 115.04 wind 1.0 14400 < th dose dependent rect. 24 23
363 115.04 humidity 80.0 43200 > th dose dependent rect. 4 23
376 115.05 humidity 80.0 43200 > th dose dependent rect. 18 23
404 115.08 humidity 80.0 43200 > th dose dependent rect. 15 23
442 115.11 wind 1.0 14400 < th dose dependent rect. 19 21
484 115.15 wind 1.0 14400 < th dose dependent rect. 19 23
485 115.16 humidity 90.0 43200 > th dose independent sin 14 NA
496 115.17 humidity 90.0 43200 > th dose dependent rect. 5 1
597 115.23 wind 1.0 14400 < th dose dependent rect. 21 19
599 115.23 wind 1.0 14400 < th dose dependent rect. 21 21
602 115.24 humidity 70.0 43200 < th dose independent rect. 11 2
642 115.27 humidity 90.0 43200 < th dose independent rect. 23 17
644 115.27 wind 1.0 14400 < th dose dependent no NA NA
704 115.32 humidity 90.0 43200 > th dose independent rect. 5 1
736 115.34 wind 1.0 14400 < th dose dependent rect. 24 20
768 115.37 temperature 25.0 43200 > th dose independent rect. 23 1
782 115.37 wind 1.0 14400 < th dose dependent rect. 8 23
803 115.39 humidity 90.0 43200 > th dose dependent rect. 24 7
853 115.43 wind 1.0 14400 > th dose independent rect. 24 22
883 115.45 wind 1.0 14400 > th dose independent rect. 19 8
935 115.47 wind 3.0 14400 < th dose dependent rect. 7 2
939 115.47 radiation 1.0 43200 < th dose dependent rect. 20 7
943 115.48 wind 1.0 14400 > th dose independent rect. 7 2
946 115.48 wind 1.0 14400 > th dose independent rect. 24 20
966 115.49 humidity 80.0 43200 > th dose independent rect. 3 16
968 115.49 atmosphere 1000.0 14400 > th dose dependent sin 5 NA
969 115.49 precipitation 0.1 43200 > th dose dependent rect. 17 1