Os01g0546500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0546500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.4 | 0.602 | 7.92 | 2.19 | 3.18 | -2.02 | 0.622 | -0.552 | 0.312 | 16.7 | 29.21 | 99 | 2.96 | 19.9 |
| 164.72 | 0.598 | 7.92 | 2.12 | 3.2 | -1.99 | 0.62 | -- | 0.305 | 16.6 | 29.24 | 95 | 3 | 19.9 |
| 165.38 | 0.599 | 7.92 | 2.2 | 3.18 | -2.06 | -- | -0.589 | 0.312 | 16.7 | 29.11 | 99 | 2.97 | 19.9 |
| 165.66 | 0.599 | 7.92 | 2.12 | 3.21 | -2.02 | -- | -- | 0.304 | 16.6 | 29.35 | 98 | 3.02 | 19.8 |
| 511.44 | 1.05 | 7.96 | 1.65 | -- | -4.52 | -- | -1.55 | -0.12 | -- | 32.17 | 203 | 2 | 24 |
| 227.14 | 0.707 | 7.87 | 2.52 | 3.46 | -- | 1.17 | -- | 0.602 | 16.8 | -- | -- | -- | -- |
| 230.7 | 0.711 | 7.86 | 2.53 | 3.47 | -- | -- | -- | 0.608 | 16.8 | -- | -- | -- | -- |
| 513.59 | 1.06 | 7.98 | 1.41 | -- | -4.58 | -- | -- | -0.14 | -- | 32.8 | 207 | 3.9 | 24 |
| 275.19 | 0.773 | 8.01 | -- | 2.9 | -2.85 | -- | -- | -0.0296 | 16.6 | 27.92 | 131 | 2.38 | 20.4 |
| 865.37 | 1.37 | 7.83 | 2.4 | -- | -- | -- | -- | 0.518 | -- | -- | -- | -- | -- |
| 399.19 | 0.935 | 7.93 | -- | 3.42 | -- | -- | -- | 0.327 | 16.8 | -- | -- | -- | -- |
| 561.37 | 1.1 | 8.04 | -- | -- | -4.98 | -- | -- | -0.412 | -- | 32.04 | 215 | 2.97 | 24 |
| 1017.21 | 1.49 | 7.89 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 6 | 170.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 7 | 170.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 17 | 172.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 21 | 172.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 39 | 174.58 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 43 | 174.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 54 | 175.40 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 55 | 175.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 136 | 178.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 145 | 178.77 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 15 |
| 220 | 180.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 234 | 180.86 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 245 | 180.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 247 | 181.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 254 | 181.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 367 | 183.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 402 | 183.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 407 | 183.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 453 | 184.32 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 473 | 184.56 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 488 | 184.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 498 | 184.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 619 | 186.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 646 | 186.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 652 | 186.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 15 |
| 668 | 186.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 674 | 186.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 709 | 187.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 713 | 187.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 733 | 187.40 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |
| 773 | 187.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 777 | 187.76 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 11 |
| 801 | 187.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 814 | 188.03 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 2 |
| 841 | 188.24 | temperature | 20 | 270 | > th | dose independent | sin | 6 | NA |
| 844 | 188.25 | temperature | 20 | 270 | < th | dose independent | sin | 6 | NA |
| 866 | 188.49 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 7 |