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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0546400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.72 (0.0432) R2 : 0.824
β1 : 1.34 (0.158) R2dD : 0.0296 R2D : 0.0246
β2 : 3.74 (0.137) R2dC : 0.454 R2C : 0.7
β3 : 2.33 (0.184) R2dE : 0.0978 R2E : 0.339
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0737 (0.0921) R2dN8 : 0.000345 R2N8 : -0.00215
σ : 0.807
deviance : 299.88
__
_____
C
peak time of C : 8.04
E
wheather : precipitation
threshold : 0.003668
memory length : 253
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.8
open length of G : 21.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
284.3 0.792 6.73 1.31 3.63 2.3 -1.92 3.86 -0.0796 8.09 0.4779 268 17 21.2
299.9 0.807 6.73 1.3 3.73 2.32 -0.34 -- -0.105 8.08 0.2437 258 16.8 21.5
293.04 0.797 6.72 1.32 3.7 2.3 -- 3.39 -0.0801 8.04 0.3616 253 17 21.4
299.88 0.807 6.72 1.34 3.74 2.33 -- -- -0.0737 8.04 0.003668 253 16.8 21.6
375.63 0.903 6.73 1.35 -- 4.81 -- 1.34 0.104 -- 1.249 608 17.4 17.8
383.2 0.918 6.7 1.2 4.88 -- 0.357 -- -0.112 7.54 -- -- -- --
383.55 0.917 6.7 1.21 4.88 -- -- -- -0.113 7.55 -- -- -- --
366.12 0.891 6.78 1.26 -- 5.05 -- -- 0.0104 -- 1.391 595 18 16.8
347.96 0.869 6.74 -- 3.86 2.16 -- -- -0.221 7.95 0.5133 245 16.9 21.6
1660.46 1.9 6.82 1.28 -- -- -- -- -0.0373 -- -- -- -- --
422.22 0.961 6.73 -- 4.89 -- -- -- -0.248 7.53 -- -- -- --
405.17 0.937 6.85 -- -- 4.78 -- -- -0.216 -- 2.948 637 18 16.4
1703.86 1.93 6.85 -- -- -- -- -- -0.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 284.72 precipitation 0.1 270 < th dose independent rect. 17 21
2 284.72 precipitation 0.1 270 < th dose dependent rect. 17 21
3 288.57 temperature 15.0 270 > th dose independent rect. 17 21
4 290.19 precipitation 0.1 270 < th dose independent rect. 18 19
5 290.19 precipitation 0.1 270 < th dose dependent rect. 18 19
8 290.84 temperature 15.0 270 > th dose independent rect. 18 19
9 291.65 temperature 20.0 270 > th dose independent rect. 14 3
10 292.18 wind 9.0 270 < th dose independent rect. 14 3
11 292.35 wind 1.0 270 > th dose independent rect. 14 3
12 292.63 temperature 10.0 270 > th dose independent rect. 14 3
14 292.63 atmosphere 1010.0 270 < th dose independent rect. 14 3
19 292.99 wind 1.0 270 > th dose independent rect. 13 5
20 293.12 precipitation 0.1 270 < th dose independent rect. 14 3
21 293.12 precipitation 0.1 270 < th dose dependent rect. 14 3
22 293.23 wind 9.0 270 < th dose independent rect. 17 21
23 293.52 temperature 20.0 270 > th dose independent rect. 13 5
25 293.87 wind 9.0 270 < th dose independent rect. 13 5
27 294.00 humidity 60.0 14400 > th dose independent rect. 21 5
28 294.06 humidity 50.0 270 > th dose independent rect. 18 19
29 294.44 temperature 10.0 270 > th dose independent rect. 13 5
31 294.44 atmosphere 1010.0 270 < th dose independent rect. 13 5
34 294.53 wind 9.0 270 < th dose independent rect. 18 19
35 294.53 atmosphere 995.0 270 > th dose independent rect. 17 21
36 294.89 atmosphere 995.0 270 > th dose independent rect. 18 19
38 295.41 humidity 50.0 270 > th dose independent rect. 17 21
48 296.75 radiation 40.0 270 < th dose independent rect. 14 3
53 297.28 precipitation 0.1 270 < th dose independent rect. 13 5
54 297.28 precipitation 0.1 270 < th dose dependent rect. 13 5
56 297.46 temperature 10.0 90 > th dose dependent rect. 19 6
63 297.85 temperature 15.0 270 > th dose dependent rect. 19 3
77 298.26 temperature 10.0 270 > th dose dependent rect. 14 3
78 298.39 radiation 1.0 270 > th dose independent rect. 14 3
98 299.22 radiation 20.0 43200 < th dose dependent rect. 21 5
106 299.45 radiation 40.0 14400 < th dose independent rect. 16 5
122 300.49 temperature 15.0 10 > th dose independent rect. 20 19
176 301.83 radiation 1.0 270 > th dose independent rect. 17 21
177 301.89 wind 9.0 10 < th dose independent rect. 14 6
178 301.89 wind 9.0 10 < th dose independent rect. 20 18
179 301.89 radiation 40.0 270 < th dose independent rect. 18 20
180 301.90 temperature 10.0 10 > th dose independent rect. 14 6
182 301.90 atmosphere 1010.0 10 < th dose independent rect. 14 6
185 301.90 atmosphere 995.0 10 > th dose independent rect. 20 18
207 302.17 temperature 15.0 1440 > th dose independent rect. 16 5
211 302.22 precipitation 0.1 10 < th dose independent rect. 14 6
212 302.22 precipitation 0.1 10 < th dose dependent rect. 14 6
235 302.79 wind 1.0 10 > th dose independent rect. 14 6
248 303.26 wind 9.0 270 < th dose dependent rect. 14 3
250 303.34 temperature 10.0 270 > th dose dependent rect. 15 1
258 303.43 humidity 90.0 270 < th dose independent rect. 14 3
261 303.46 atmosphere 995.0 270 > th dose independent rect. 14 3
278 303.63 temperature 15.0 270 > th dose independent rect. 9 14
300 304.23 temperature 15.0 270 > th dose dependent rect. 20 1
308 304.41 temperature 10.0 1440 > th dose independent rect. 21 19
319 304.62 radiation 40.0 10 < th dose dependent rect. 14 6
320 304.63 atmosphere 995.0 270 > th dose independent rect. 13 5
327 304.95 wind 1.0 90 > th dose independent rect. 1 18
349 305.35 temperature 15.0 90 > th dose independent rect. 19 6
351 305.40 precipitation 0.1 270 < th dose independent rect. 9 14
353 305.40 precipitation 0.1 270 < th dose dependent rect. 9 14
355 305.45 precipitation 0.1 270 < th dose independent rect. 3 10
356 305.45 precipitation 0.1 270 < th dose dependent rect. 3 10
358 305.48 radiation 1.0 270 > th dose independent rect. 4 10
370 305.57 temperature 10.0 10 > th dose dependent rect. 20 5
390 306.32 atmosphere 1015.0 270 < th dose dependent rect. 14 3
394 306.53 atmosphere 1015.0 270 < th dose independent rect. 18 19
399 306.69 wind 9.0 90 < th dose independent rect. 1 18
422 306.91 precipitation 0.1 90 < th dose independent rect. 19 6
423 306.91 precipitation 0.1 90 < th dose dependent rect. 19 6
432 306.98 temperature 30.0 90 < th dose independent rect. 19 6
433 306.98 humidity 50.0 90 > th dose independent rect. 19 6
435 306.98 atmosphere 995.0 90 > th dose independent rect. 19 6
436 306.98 radiation 1.0 90 < th dose independent rect. 19 6
441 306.98 temperature 10.0 90 > th dose independent rect. 1 18
442 306.98 atmosphere 1015.0 90 < th dose independent rect. 1 18
443 306.98 radiation 1.0 90 < th dose dependent rect. 19 6
448 307.03 wind 9.0 90 < th dose independent rect. 19 6
462 307.39 wind 9.0 270 < th dose dependent rect. 13 5
463 307.41 temperature 10.0 270 > th dose independent rect. 23 10
464 307.41 humidity 50.0 270 > th dose independent rect. 23 10
465 307.41 atmosphere 995.0 270 > th dose independent rect. 23 10
469 307.52 wind 9.0 270 < th dose independent rect. 23 10
475 307.70 radiation 40.0 270 < th dose independent rect. 23 10
484 307.85 radiation 40.0 90 < th dose dependent rect. 14 5
490 307.98 temperature 30.0 270 < th dose independent rect. 18 19
503 308.42 humidity 50.0 270 > th dose independent rect. 9 14
554 309.20 temperature 15.0 270 > th dose independent rect. 3 10
559 309.38 temperature 10.0 10 > th dose dependent rect. 15 5
560 309.44 wind 9.0 270 < th dose independent rect. 23 19
561 309.45 precipitation 0.1 270 < th dose independent rect. 19 3
562 309.45 precipitation 0.1 270 < th dose dependent rect. 19 3
564 309.53 humidity 50.0 10 > th dose independent rect. 20 19
565 309.55 atmosphere 1015.0 270 < th dose independent rect. 23 10
572 309.71 temperature 30.0 270 < th dose independent rect. 23 10
575 309.85 atmosphere 995.0 10 > th dose independent rect. 15 5
593 309.99 temperature 10.0 270 > th dose independent rect. 23 19
599 310.08 atmosphere 995.0 270 > th dose independent rect. 3 10
600 310.08 atmosphere 1015.0 270 < th dose independent rect. 3 10
601 310.08 temperature 10.0 270 > th dose independent rect. 13 14
609 310.26 wind 1.0 270 > th dose independent rect. 18 5
610 310.29 humidity 50.0 270 > th dose dependent rect. 22 11
613 310.34 radiation 10.0 270 < th dose independent sin 14 NA
618 310.36 wind 9.0 270 < th dose independent rect. 3 10
620 310.40 wind 9.0 270 < th dose independent rect. 13 14
632 310.63 temperature 15.0 270 > th dose independent rect. 19 3
633 310.68 wind 1.0 270 > th dose independent rect. 19 3
634 310.70 radiation 20.0 270 < th dose dependent sin 14 NA
652 311.01 atmosphere 1015.0 10 < th dose independent rect. 20 19
663 311.19 wind 9.0 270 < th dose independent rect. 22 21
670 311.27 wind 9.0 90 < th dose dependent rect. 19 20
691 311.60 temperature 15.0 270 > th dose independent rect. 22 21
692 311.64 wind 7.0 270 < th dose independent rect. 19 3
699 311.75 humidity 60.0 270 > th dose independent rect. 19 3
701 311.77 radiation 1.0 270 < th dose dependent rect. 19 3
707 311.78 temperature 30.0 270 < th dose independent rect. 19 3
709 311.78 atmosphere 995.0 270 > th dose independent rect. 19 3
710 311.78 radiation 1.0 270 < th dose independent rect. 19 3
718 311.80 radiation 40.0 270 < th dose dependent rect. 18 18
719 311.81 precipitation 0.1 90 < th dose independent rect. 1 18
720 311.81 precipitation 0.1 90 < th dose dependent rect. 1 18
725 311.87 wind 9.0 10 < th dose dependent rect. 20 18
728 311.94 precipitation 0.1 270 < th dose independent rect. 17 8
729 311.94 precipitation 0.1 270 < th dose dependent rect. 17 8
737 312.01 wind 9.0 270 < th dose independent rect. 9 14
742 312.11 atmosphere 1015.0 270 < th dose independent rect. 23 19
774 312.52 precipitation 0.1 270 < th dose independent rect. 23 10
775 312.52 precipitation 0.1 270 < th dose dependent rect. 23 10
782 312.59 radiation 20.0 14400 < th dose independent rect. 21 9
800 312.93 humidity 50.0 10 > th dose independent rect. 15 5
801 312.93 atmosphere 1015.0 270 < th dose dependent rect. 13 5
828 313.30 wind 1.0 90 > th dose dependent rect. 15 4
830 313.32 radiation 10.0 270 < th dose independent rect. 17 8
831 313.37 temperature 15.0 10 > th dose independent rect. 20 5
833 313.39 atmosphere 1015.0 90 < th dose independent rect. 19 6
867 313.54 radiation 1.0 1440 < th dose dependent rect. 21 5
879 313.64 atmosphere 1015.0 270 < th dose independent rect. 19 3
920 313.89 wind 9.0 30 < th dose dependent rect. 14 6
941 314.10 humidity 50.0 270 > th dose independent rect. 3 10
958 314.18 precipitation 0.1 10 < th dose independent rect. 20 5
959 314.18 precipitation 0.1 10 < th dose dependent rect. 20 5
966 314.20 radiation 1.0 270 < th dose independent sin 16 NA
977 314.31 radiation 20.0 4320 < th dose dependent rect. 21 5
994 314.54 atmosphere 995.0 270 > th dose independent rect. 9 14