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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0546000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0456) R2 : 0.07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.41 (0.607) R2dE : 0.065 R2E : 0.0581
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.204 (0.0962) R2dN8 : 0.0119 R2N8 : 0.00499
σ : 0.856
deviance : 337.41
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.025
memory length : 124
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.18
open length of G : 0.729

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
325.51 0.848 3.33 -0.0441 0.334 1.93 0.099 -10.4 -0.182 18.3 1.007 114 1.07 0.798
332.45 0.849 3.35 0.0304 0.348 2.8 0.223 -- -0.169 18.9 0.9011 126 1.17 0.717
325.15 0.84 3.33 -0.0451 0.339 1.95 -- -10.9 -0.18 18.2 1.019 108 1.1 0.75
331.42 0.848 3.35 0.0248 0.351 3.38 -- -- -0.209 18.1 0.9381 124 1.18 0.734
329.17 0.845 3.32 -0.0879 -- 1.11 -- -15.3 -0.189 -- 1.085 121 1.2 0.536
356.25 0.885 3.34 -0.0126 0.284 -- 0.294 -- -0.156 19.5 -- -- -- --
356.48 0.884 3.34 -0.02 0.283 -- -- -- -0.155 19.6 -- -- -- --
337.64 0.856 3.34 0.0138 -- 3.24 -- -- -0.214 -- 0.9235 125 1.19 0.726
331.44 0.848 3.35 -- 0.348 3.39 -- -- -0.212 18.1 0.9411 123 1.18 0.735
360.79 0.888 3.33 -0.0239 -- -- -- -- -0.16 -- -- -- -- --
356.49 0.883 3.34 -- 0.283 -- -- -- -0.153 19.6 -- -- -- --
337.41 0.856 3.34 -- -- 3.41 -- -- -0.204 -- 1.025 124 1.18 0.729
360.81 0.887 3.33 -- -- -- -- -- -0.157 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 328.83 wind 1.0 90 < th dose independent rect. 1 1
2 330.31 wind 1.0 30 < th dose dependent rect. 24 3
3 330.42 wind 1.0 30 < th dose independent rect. 24 3
14 334.03 wind 1.0 10 < th dose independent rect. 22 5
18 334.37 wind 1.0 10 < th dose independent rect. 17 10
30 334.80 wind 1.0 10 < th dose dependent rect. 22 5
33 334.98 wind 1.0 10 < th dose dependent rect. 17 10
46 335.78 temperature 30.0 10 < th dose independent rect. 3 9
52 337.07 humidity 70.0 90 > th dose independent rect. 3 9
56 337.70 radiation 30.0 270 > th dose dependent rect. 7 1
76 338.01 humidity 60.0 30 > th dose dependent rect. 12 15
93 338.61 humidity 80.0 30 > th dose independent rect. 13 14
110 338.90 radiation 20.0 90 < th dose independent rect. 3 9
128 339.36 radiation 20.0 270 < th dose dependent rect. 2 8
143 339.62 wind 1.0 90 < th dose independent rect. 15 11
178 339.80 radiation 20.0 270 < th dose independent rect. 1 9
182 339.83 wind 1.0 90 < th dose independent rect. 20 6
188 339.89 temperature 30.0 30 < th dose independent rect. 3 7
190 339.92 wind 7.0 1440 > th dose dependent rect. 1 2
193 339.94 wind 7.0 1440 > th dose independent rect. 1 2
203 340.02 temperature 30.0 30 < th dose dependent rect. 13 14
213 340.06 humidity 90.0 10 > th dose independent rect. 24 3
229 340.20 temperature 25.0 10 < th dose independent rect. 13 14
233 340.22 humidity 50.0 90 > th dose dependent rect. 3 9
262 340.46 temperature 20.0 10 > th dose dependent rect. 2 1
271 340.53 wind 7.0 30 < th dose dependent rect. 3 6
293 340.67 humidity 50.0 90 > th dose independent rect. 9 18
307 340.79 temperature 20.0 90 > th dose dependent rect. 1 2
318 340.83 humidity 80.0 30 > th dose independent rect. 10 17
322 340.85 radiation 10.0 1440 > th dose independent rect. 5 1
336 340.85 radiation 10.0 1440 > th dose dependent rect. 5 1
382 341.03 wind 5.0 10 < th dose independent rect. 3 6
394 341.07 radiation 10.0 43200 < th dose dependent rect. 3 1
399 341.13 atmosphere 1000.0 90 > th dose independent rect. 3 6
408 341.20 radiation 1.0 90 < th dose independent rect. 12 15
417 341.23 radiation 1.0 90 < th dose dependent rect. 12 15
420 341.24 wind 1.0 10 < th dose independent sin 17 NA
433 341.29 radiation 20.0 10 < th dose independent rect. 3 10
437 341.30 atmosphere 1005.0 30 > th dose dependent rect. 2 1
438 341.31 humidity 80.0 90 > th dose independent rect. 21 6
447 341.36 temperature 20.0 30 > th dose independent rect. 2 1
453 341.39 wind 9.0 1440 < th dose independent rect. 3 1
454 341.39 temperature 10.0 1440 > th dose independent rect. 3 1
457 341.39 temperature 30.0 1440 < th dose independent rect. 3 1
461 341.39 humidity 50.0 1440 > th dose independent rect. 3 1
470 341.39 atmosphere 995.0 1440 > th dose independent rect. 3 1
471 341.39 radiation 1.0 1440 < th dose independent rect. 3 1
491 341.39 temperature 10.0 1440 > th dose independent rect. 4 23
495 341.39 radiation 1.0 1440 < th dose dependent rect. 3 1
519 341.40 radiation 30.0 90 < th dose independent rect. 3 6
523 341.42 temperature 30.0 10 > th dose dependent rect. 9 1
546 341.45 atmosphere 1005.0 30 > th dose independent rect. 2 1
575 341.49 temperature 30.0 90 > th dose dependent rect. 9 1
594 341.59 humidity 70.0 30 > th dose dependent rect. 21 6
617 341.64 precipitation 0.1 90 < th dose independent rect. 3 6
626 341.64 precipitation 0.1 90 < th dose dependent rect. 3 6
681 341.82 temperature 30.0 90 > th dose independent rect. 9 1
682 341.82 humidity 80.0 30 > th dose dependent rect. 2 1
690 341.85 humidity 50.0 90 > th dose dependent rect. 3 6
711 341.92 temperature 10.0 90 > th dose independent rect. 3 6
714 341.92 humidity 50.0 90 > th dose independent rect. 3 6
716 341.92 atmosphere 1015.0 90 < th dose independent rect. 3 6
726 341.92 temperature 10.0 90 > th dose independent rect. 9 18
730 341.94 precipitation 0.1 90 < th dose independent rect. 3 18
732 341.94 precipitation 0.1 90 < th dose dependent rect. 3 18
739 341.99 radiation 30.0 270 > th dose independent rect. 7 1
756 341.99 humidity 80.0 10 > th dose dependent rect. 10 17
768 342.02 temperature 30.0 30 < th dose dependent rect. 17 10
790 342.10 atmosphere 1015.0 90 < th dose independent rect. 9 18
803 342.15 temperature 30.0 10 < th dose independent rect. 3 23
823 342.23 atmosphere 995.0 90 > th dose independent rect. 9 18
839 342.27 temperature 10.0 30 > th dose independent rect. 2 1
841 342.27 temperature 30.0 30 < th dose independent rect. 2 1
842 342.27 humidity 50.0 30 > th dose independent rect. 2 1
846 342.27 atmosphere 1010.0 30 < th dose independent rect. 2 1
848 342.27 radiation 1.0 30 < th dose independent rect. 2 1
853 342.27 precipitation 0.1 30 < th dose independent rect. 2 1
855 342.27 temperature 10.0 30 > th dose independent rect. 3 23
856 342.27 radiation 1.0 30 < th dose dependent rect. 2 1
861 342.27 precipitation 0.1 30 < th dose dependent rect. 2 1
862 342.28 wind 1.0 10 > th dose independent sin 17 NA
890 342.34 wind 9.0 90 < th dose independent rect. 9 18
923 342.45 temperature 20.0 10 > th dose dependent rect. 16 15