Os01g0544700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os01g0544700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.88 | 0.348 | 9.49 | -0.704 | 0.151 | -1.95 | -0.46 | -0.178 | -0.181 | 6.8 | 31.02 | 29 | -- | -- |
| 54.91 | 0.345 | 9.49 | -0.735 | 0.15 | -1.96 | -0.472 | -- | -0.188 | 6.63 | 31.1 | 27 | -- | -- |
| 55.41 | 0.347 | 9.49 | -0.709 | 0.153 | -1.97 | -- | -0.22 | -0.179 | 6.68 | 31.1 | 28 | -- | -- |
| 55.46 | 0.347 | 9.49 | -0.742 | 0.15 | -1.97 | -- | -- | -0.188 | 6.65 | 31.12 | 26 | -- | -- |
| 56.1 | 0.351 | 9.49 | -0.676 | -- | -1.9 | -- | -0.244 | -0.161 | -- | 31.1 | 28 | -- | -- |
| 104.04 | 0.478 | 9.41 | -0.298 | 0.594 | -- | 0.307 | -- | 0.16 | 13.7 | -- | -- | -- | -- |
| 104.4 | 0.478 | 9.41 | -0.288 | 0.593 | -- | -- | -- | 0.162 | 13.6 | -- | -- | -- | -- |
| 56.17 | 0.351 | 9.49 | -0.715 | -- | -1.9 | -- | -- | -0.171 | -- | 31.12 | 26 | -- | -- |
| 68.22 | 0.387 | 9.46 | -- | 0.11 | -1.65 | -- | -- | -0.0546 | 10.2 | 31.12 | 26 | -- | -- |
| 125.92 | 0.524 | 9.42 | -0.312 | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
| 106.6 | 0.483 | 9.4 | -- | 0.598 | -- | -- | -- | 0.194 | 13.6 | -- | -- | -- | -- |
| 68.87 | 0.388 | 9.47 | -- | -- | -1.71 | -- | -- | -0.0621 | -- | 31.2 | 22 | -- | -- |
| 128.49 | 0.529 | 9.41 | -- | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 2 | 54.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 4 | 54.65 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 5 | 54.71 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 7 | 54.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 9 | 55.10 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 13 | 55.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 20 | 55.93 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 25 | 56.21 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 26 | 56.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 27 | 56.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 28 | 56.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 31 | 56.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 39 | 57.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 41 | 57.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 44 | 57.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 45 | 57.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 49 | 57.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 52 | 57.39 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 66 | 57.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 74 | 57.57 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 114 | 57.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 116 | 57.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 141 | 57.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 21 |
| 214 | 58.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 227 | 58.06 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 229 | 58.07 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 253 | 58.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 273 | 58.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 277 | 58.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 311 | 58.16 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 451 | 58.33 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 470 | 58.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 556 | 58.44 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 20 |
| 651 | 58.55 | temperature | 15 | 1440 | > th | dose dependent | sin | 16 | NA |
| 865 | 58.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 12 |
| 907 | 58.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 6 |
| 929 | 58.82 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |