Os01g0543100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a).
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Os01g0543100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.82 | 0.743 | 6.59 | 2.3 | 0.352 | 1.77 | 3.86 | 5.09 | 0.184 | 18.3 | 20.69 | 938 | 7.49 | -- |
| 263.62 | 0.756 | 6.72 | 1.2 | 0.111 | 2.07 | 3.27 | -- | -0.0192 | 18.7 | 23.29 | 1011 | 7.33 | -- |
| 279.49 | 0.779 | 6.56 | 2.12 | 0.252 | 1.63 | -- | 4.65 | 0.283 | 13.5 | 21.16 | 969 | 10.1 | -- |
| 286.05 | 0.788 | 6.68 | 1.05 | 0.128 | 1.95 | -- | -- | -0.0101 | 12.6 | 23.51 | 1091 | 9.89 | -- |
| 281.44 | 0.781 | 6.56 | 2.1 | -- | 1.58 | -- | 4.3 | 0.226 | -- | 21 | 1047 | 10.5 | -- |
| 382.62 | 0.917 | 6.61 | 1.61 | 0.234 | -- | -2.93 | -- | 0.267 | 6.78 | -- | -- | -- | -- |
| 394.89 | 0.931 | 6.61 | 1.54 | 0.461 | -- | -- | -- | 0.268 | 2.88 | -- | -- | -- | -- |
| 286.17 | 0.788 | 6.62 | 1.12 | -- | 1.71 | -- | -- | 0.394 | -- | 26.59 | 1084 | 7.51 | -- |
| 312.15 | 0.823 | 6.68 | -- | 0.109 | 2.09 | -- | -- | -0.0788 | 12.8 | 23.6 | 1116 | 10.5 | -- |
| 407.18 | 0.943 | 6.61 | 1.56 | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
| 457.68 | 1 | 6.65 | -- | 0.492 | -- | -- | -- | 0.096 | 2.9 | -- | -- | -- | -- |
| 312.59 | 0.823 | 6.71 | -- | -- | 2.05 | -- | -- | -0.141 | -- | 23.45 | 1153 | 10.8 | -- |
| 471.63 | 1.01 | 6.65 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 253.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 2 | 253.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 5 | 255.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 11 | 257.39 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 17 | 257.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 28 | 259.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 45 | 260.36 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 54 | 260.92 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 61 | 261.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 107 | 264.61 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 6 |
| 156 | 267.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 165 | 268.22 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 212 | 269.77 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 2 |
| 220 | 270.10 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 17 |
| 263 | 271.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 281 | 271.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 317 | 272.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 432 | 275.32 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 20 |
| 448 | 275.54 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 492 | 276.45 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 525 | 276.87 | temperature | 30 | 1440 | < th | dose independent | sin | 13 | NA |
| 541 | 277.09 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 580 | 277.32 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 17 |
| 623 | 277.76 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 729 | 278.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 730 | 278.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 739 | 278.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 745 | 278.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 827 | 278.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 952 | 279.25 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 981 | 279.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 21 |