Os01g0541800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MtN3 and saliva related transmembrane protein family protein.
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Os01g0541800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MtN3 and saliva related transmembrane protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 364.17 | 0.897 | 5.35 | -4.84 | 1.12 | 0.984 | -2.71 | -3.18 | 0.132 | 3.82 | 20.6 | 264 | -- | -- |
| 388.77 | 0.918 | 5.38 | -4.4 | 1.07 | 1.7 | -2.1 | -- | 0.244 | 4.02 | 19.1 | 309 | -- | -- |
| 380.53 | 0.909 | 5.34 | -4.75 | 1.11 | 1.07 | -- | -2.73 | 0.147 | 4.31 | 20.4 | 415 | -- | -- |
| 393.62 | 0.924 | 5.25 | -4.42 | 1.15 | 1.83 | -- | -- | 0.3 | 4.3 | 19.2 | 320 | -- | -- |
| 434.86 | 0.971 | 5.34 | -4.8 | -- | 1.04 | -- | -2.72 | 0.165 | -- | 20.58 | 965 | -- | -- |
| 454.69 | 1 | 5.22 | -3.86 | 0.97 | -- | -1.53 | -- | 0.515 | 3.99 | -- | -- | -- | -- |
| 461.28 | 1.01 | 5.21 | -3.84 | 0.968 | -- | -- | -- | 0.524 | 4.21 | -- | -- | -- | -- |
| 449.73 | 0.988 | 5.29 | -4.54 | -- | 2.04 | -- | -- | 0.227 | -- | 19.1 | 1246 | -- | -- |
| 848.36 | 1.36 | 5.12 | -- | 0.922 | 0.228 | -- | -- | 0.926 | 4.15 | 19.2 | 320 | -- | -- |
| 511.95 | 1.06 | 5.22 | -3.8 | -- | -- | -- | -- | 0.549 | -- | -- | -- | -- | -- |
| 850.01 | 1.36 | 5.12 | -- | 0.895 | -- | -- | -- | 0.951 | 4.3 | -- | -- | -- | -- |
| 812.78 | 1.33 | 5.06 | -- | -- | -3.41 | -- | -- | 1.19 | -- | 17.78 | 12046 | -- | -- |
| 893.17 | 1.39 | 5.12 | -- | -- | -- | -- | -- | 0.971 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 342.51 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 3 | 343.14 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 5 | 343.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 9 | 344.47 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 14 | 344.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 19 | 345.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 41 | 347.57 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 43 | 347.60 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 57 | 348.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 62 | 349.06 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 82 | 350.43 | humidity | 90 | 14400 | < th | dose independent | sin | 9 | NA |
| 130 | 352.74 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 160 | 354.06 | humidity | 80 | 14400 | > th | dose dependent | sin | 9 | NA |
| 195 | 355.03 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 196 | 355.04 | humidity | 90 | 14400 | > th | dose dependent | sin | 6 | NA |
| 229 | 355.85 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 270 | 356.60 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 277 | 356.88 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 285 | 357.00 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 337 | 357.88 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 6 |
| 352 | 358.06 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 359 | 358.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 388 | 358.73 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 584 | 362.07 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 22 |
| 756 | 364.71 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 804 | 365.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 819 | 365.59 | radiation | 1 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 829 | 365.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 886 | 366.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 927 | 367.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 935 | 367.44 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 23 |
| 975 | 367.93 | radiation | 1 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 979 | 368.01 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 998 | 368.26 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 22 |