Os01g0539900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0539900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.66 | 0.317 | 10.2 | -0.731 | 0.41 | 0.394 | 0.234 | -0.665 | -0.25 | 14.3 | 19.8 | 2626 | -- | -- |
| 46.43 | 0.317 | 10.2 | -0.62 | 0.423 | 0.509 | 0.186 | -- | -0.22 | 14.2 | 19.9 | 2611 | -- | -- |
| 45.84 | 0.315 | 10.2 | -0.73 | 0.407 | 0.394 | -- | -0.692 | -0.252 | 14.1 | 19.8 | 2625 | -- | -- |
| 46.66 | 0.318 | 10.2 | -0.623 | 0.418 | 0.517 | -- | -- | -0.221 | 14.1 | 19.8 | 2609 | -- | -- |
| 55.55 | 0.347 | 10.2 | -0.731 | -- | 0.341 | -- | -0.75 | -0.242 | -- | 19.89 | 2860 | -- | -- |
| 51.51 | 0.336 | 10.1 | -0.358 | 0.382 | -- | 0.369 | -- | -0.103 | 14.5 | -- | -- | -- | -- |
| 51.92 | 0.337 | 10.1 | -0.348 | 0.381 | -- | -- | -- | -0.101 | 14.1 | -- | -- | -- | -- |
| 55.9 | 0.348 | 10.2 | -0.57 | -- | 0.511 | -- | -- | -0.204 | -- | 19.7 | 1622 | -- | -- |
| 52.97 | 0.339 | 10.1 | -- | 0.419 | 0.292 | -- | -- | -0.128 | 13.6 | 20.6 | 1069 | -- | -- |
| 60.63 | 0.364 | 10.1 | -0.364 | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
| 55.12 | 0.347 | 10.1 | -- | 0.388 | -- | -- | -- | -0.0622 | 14.1 | -- | -- | -- | -- |
| 61.08 | 0.365 | 10.1 | -- | -- | 0.252 | -- | -- | -0.11 | -- | 20.5 | 1570 | -- | -- |
| 64.13 | 0.374 | 10.1 | -- | -- | -- | -- | -- | -0.0696 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 2 | 42.95 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 6 | 43.37 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 17 | 43.62 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 15 |
| 18 | 43.63 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 18 |
| 21 | 43.74 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 17 | 15 |
| 35 | 43.89 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 15 | 17 |
| 36 | 43.90 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 20 | 1 |
| 42 | 43.96 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 56 | 44.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 87 | 44.37 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 105 | 44.45 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 19 | 3 |
| 125 | 44.55 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 137 | 44.58 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 17 | 15 |
| 153 | 44.66 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 2 |
| 163 | 44.70 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 179 | 44.75 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 13 |
| 186 | 44.77 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 11 |
| 235 | 44.87 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 287 | 45.02 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 289 | 45.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 303 | 45.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 347 | 45.17 | temperature | 30 | 90 | < th | dose independent | rect. | 11 | 21 |
| 390 | 45.25 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 392 | 45.25 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 432 | 45.32 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 1 |
| 438 | 45.34 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 21 |
| 466 | 45.39 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 5 |
| 492 | 45.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 506 | 45.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 510 | 45.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 521 | 45.47 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 541 | 45.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 547 | 45.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 582 | 45.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 588 | 45.54 | humidity | 50 | 10 | > th | dose independent | rect. | 8 | 7 |
| 592 | 45.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 593 | 45.54 | radiation | 40 | 90 | < th | dose independent | rect. | 11 | 21 |
| 627 | 45.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 655 | 45.59 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 658 | 45.59 | wind | 7 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 688 | 45.62 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 708 | 45.63 | radiation | 30 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 712 | 45.64 | radiation | 30 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 738 | 45.66 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 743 | 45.66 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 744 | 45.66 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 761 | 45.68 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 779 | 45.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 781 | 45.69 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 6 |
| 801 | 45.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 821 | 45.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 830 | 45.72 | radiation | 40 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 832 | 45.72 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 833 | 45.72 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 842 | 45.73 | radiation | 40 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 847 | 45.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 848 | 45.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 855 | 45.74 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 857 | 45.74 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 889 | 45.75 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 910 | 45.76 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 941 | 45.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 942 | 45.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 945 | 45.78 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 961 | 45.79 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 971 | 45.79 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 998 | 45.81 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 999 | 45.81 | radiation | 40 | 4320 | < th | dose independent | rect. | 2 | 6 |