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Os01g0539400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0196) R2 : 0.313
β1 : -1.03 (0.0717) R2dD : 0.324 R2D : 0.306
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0806 (0.0418) R2dN8 : 0.0075 R2N8 : -0.0107
σ : 0.368
deviance : 61.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.39 0.276 11.9 -1.04 0.658 0.323 0.347 0.709 -0.0751 21.4 70.1 362 -- --
35.26 0.277 11.9 -1 0.695 0.377 0.307 -- -0.068 21.5 70 405 -- --
34.78 0.275 11.9 -1.05 0.662 0.342 -- 0.668 -0.0712 21.2 71 351 -- --
35.66 0.278 11.9 -1 0.7 0.402 -- -- -0.058 21.2 71.85 404 -- --
51.02 0.334 11.9 -1.02 -- 0.312 -- 0.408 -0.0865 -- 72.02 66 -- --
38.19 0.29 11.9 -1.03 0.605 -- 0.506 -- -0.0834 23 -- -- -- --
39.22 0.293 11.9 -1.05 0.605 -- -- -- -0.0843 22.8 -- -- -- --
49.63 0.33 11.9 -0.994 -- 0.337 -- -- -0.077 -- 75 34 -- --
61.66 0.366 11.8 -- 0.664 0.469 -- -- 0.0514 20.7 70.66 347 -- --
61.88 0.368 11.9 -1.03 -- -- -- -- -0.0806 -- -- -- -- --
68 0.386 11.8 -- 0.597 -- -- -- 0.0321 22.7 -- -- -- --
75.6 0.406 11.8 -- -- 0.365 -- -- 0.0332 -- 75 21 -- --
90.01 0.443 11.8 -- -- -- -- -- 0.034 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.99 humidity 70 270 > th dose independent rect. 13 20
4 33.10 humidity 70 90 > th dose independent sin 14 NA
6 33.20 humidity 70 90 > th dose independent sin 16 NA
17 33.50 humidity 50 10 > th dose dependent sin 16 NA
23 33.55 humidity 70 270 > th dose independent rect. 14 13
27 33.58 temperature 30 270 < th dose independent rect. 14 21
48 33.76 humidity 50 270 > th dose dependent sin 20 NA
52 33.78 humidity 70 270 < th dose independent rect. 12 8
69 33.80 radiation 20 720 < th dose independent rect. 16 17
71 33.82 humidity 70 270 > th dose independent rect. 13 9
78 33.84 humidity 70 270 > th dose independent rect. 11 11
108 33.91 humidity 90 270 < th dose dependent rect. 11 9
111 33.93 humidity 70 270 > th dose independent rect. 9 12
126 33.97 humidity 70 270 < th dose independent sin 18 NA
148 34.00 humidity 50 270 > th dose dependent rect. 9 12
151 34.01 radiation 40 270 < th dose dependent sin 18 NA
152 34.02 radiation 10 270 > th dose independent rect. 10 22
155 34.05 humidity 80 10 < th dose independent rect. 12 9
163 34.06 humidity 90 270 < th dose dependent rect. 11 13
167 34.08 radiation 10 270 < th dose independent sin 17 NA
176 34.09 humidity 60 270 > th dose dependent rect. 11 10
178 34.10 humidity 50 270 > th dose dependent rect. 13 10
197 34.13 radiation 10 270 < th dose dependent rect. 5 23
202 34.15 humidity 50 720 > th dose dependent rect. 7 9
213 34.17 humidity 50 720 > th dose dependent rect. 9 7
219 34.18 temperature 30 270 < th dose independent rect. 7 14
229 34.20 humidity 60 720 > th dose independent rect. 7 8
235 34.21 temperature 30 720 < th dose independent rect. 9 17
244 34.22 temperature 30 270 < th dose independent sin 21 NA
278 34.23 humidity 60 30 > th dose dependent rect. 17 17
307 34.25 humidity 50 270 > th dose independent rect. 14 21
347 34.28 humidity 90 30 < th dose dependent rect. 12 8
365 34.30 humidity 70 10 > th dose independent rect. 18 17
403 34.32 radiation 20 270 < th dose dependent rect. 13 20
405 34.33 humidity 50 270 > th dose independent rect. 14 11
425 34.34 radiation 10 270 < th dose independent rect. 13 19
437 34.34 humidity 70 30 > th dose dependent rect. 15 20
472 34.37 humidity 60 720 > th dose independent rect. 9 7
489 34.38 temperature 30 270 < th dose independent rect. 14 9
514 34.40 radiation 10 30 < th dose independent sin 14 NA
521 34.40 humidity 50 720 > th dose dependent rect. 11 3
545 34.42 temperature 30 270 < th dose independent rect. 14 13
559 34.43 radiation 1 270 > th dose independent sin 22 NA
560 34.43 radiation 40 720 < th dose independent sin 12 NA
575 34.44 humidity 60 720 > th dose independent sin 1 NA
576 34.44 humidity 50 270 > th dose independent rect. 14 9
581 34.44 humidity 90 270 < th dose dependent sin 20 NA
601 34.46 temperature 30 270 < th dose independent sin 15 NA
636 34.48 humidity 60 720 > th dose independent rect. 2 17
654 34.49 humidity 60 720 > th dose independent rect. 24 15
662 34.49 radiation 40 720 < th dose dependent rect. 15 18
666 34.50 radiation 10 270 > th dose independent sin 20 NA
667 34.50 humidity 60 720 > th dose independent rect. 11 4
678 34.50 radiation 40 270 < th dose dependent rect. 9 14
682 34.50 radiation 10 270 < th dose dependent rect. 9 23
709 34.52 temperature 30 720 < th dose independent rect. 7 6
730 34.53 humidity 90 90 < th dose independent sin 21 NA
740 34.53 temperature 30 720 < th dose independent rect. 9 22
771 34.55 humidity 50 270 > th dose independent sin 16 NA
850 34.58 temperature 30 720 < th dose independent sin 8 NA
851 34.58 humidity 80 10 < th dose independent sin 19 NA
852 34.58 radiation 20 720 < th dose independent sin 11 NA
875 34.59 humidity 70 10 > th dose independent rect. 18 14
899 34.60 humidity 90 30 < th dose dependent rect. 12 21
930 34.62 radiation 10 270 < th dose independent rect. 13 14
947 34.63 radiation 40 270 < th dose independent sin 18 NA