Os01g0538200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0538200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 229.27 | 0.711 | 4.62 | 0.122 | 1.44 | 4.03 | -1.38 | 5.79 | -0.292 | 15.3 | 19.37 | 285 | -- | -- |
| 235.55 | 0.72 | 4.57 | 0.0207 | 1.42 | 1.28 | -1.47 | -- | -0.314 | 15.2 | 19.37 | 285 | -- | -- |
| 235.13 | 0.714 | 4.63 | 0.0936 | 1.45 | 4.21 | -- | 6.39 | -0.299 | 15.3 | 19.41 | 276 | -- | -- |
| 237.69 | 0.718 | 4.57 | 0.0874 | 1.36 | 1.2 | -- | -- | -0.261 | 15.4 | 21.05 | 574 | -- | -- |
| 347.25 | 0.868 | 4.6 | -0.000706 | -- | 3 | -- | 3.94 | -0.355 | -- | 18.99 | 350 | -- | -- |
| 243.68 | 0.732 | 4.59 | -0.157 | 1.37 | -- | -1.4 | -- | -0.375 | 15.3 | -- | -- | -- | -- |
| 249.84 | 0.74 | 4.59 | -0.184 | 1.36 | -- | -- | -- | -0.384 | 15.2 | -- | -- | -- | -- |
| 333.79 | 0.851 | 4.56 | 0.135 | -- | 1.56 | -- | -- | -0.255 | -- | 20.8 | 947 | -- | -- |
| 237.84 | 0.718 | 4.57 | -- | 1.35 | 1.16 | -- | -- | -0.271 | 15.4 | 21.02 | 575 | -- | -- |
| 355.25 | 0.881 | 4.59 | -0.242 | -- | -- | -- | -- | -0.42 | -- | -- | -- | -- | -- |
| 250.74 | 0.741 | 4.59 | -- | 1.37 | -- | -- | -- | -0.363 | 15.2 | -- | -- | -- | -- |
| 334.19 | 0.851 | 4.56 | -- | -- | 1.48 | -- | -- | -0.277 | -- | 20.8 | 945 | -- | -- |
| 356.79 | 0.882 | 4.59 | -- | -- | -- | -- | -- | -0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.15 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 2 | 218.20 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 36 | 220.56 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 17 |
| 51 | 221.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 63 | 221.50 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 97 | 222.70 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 101 | 222.77 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 18 |
| 102 | 222.77 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 110 | 222.98 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 1 | 20 |
| 119 | 223.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 9 |
| 145 | 223.54 | temperature | 10.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 152 | 223.63 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 162 | 223.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 11 |
| 168 | 223.87 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 10 |
| 187 | 224.13 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 11 | 10 |
| 203 | 224.31 | temperature | 30.0 | 270 | < th | dose dependent | sin | 22 | NA |
| 211 | 224.43 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 231 | 224.64 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 21 |
| 271 | 224.95 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 273 | 224.96 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 284 | 225.06 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 10 |
| 285 | 225.09 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 10 | 11 |
| 288 | 225.12 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 11 |
| 291 | 225.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 297 | 225.19 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 6 | NA |
| 302 | 225.21 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 15 |
| 303 | 225.21 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 305 | 225.22 | wind | 7.0 | 270 | < th | dose independent | rect. | 14 | 11 |
| 330 | 225.29 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 13 |
| 374 | 225.41 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 10 |
| 398 | 225.50 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 401 | 225.50 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 415 | 225.56 | radiation | 20.0 | 720 | < th | dose independent | rect. | 15 | 15 |
| 455 | 225.69 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 472 | 225.74 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 494 | 225.81 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 507 | 225.84 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 511 | 225.85 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 14 |
| 517 | 225.86 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 520 | 225.87 | humidity | 90.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 527 | 225.89 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 541 | 225.92 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 627 | 226.11 | humidity | 90.0 | 270 | < th | dose independent | rect. | 24 | 19 |
| 658 | 226.17 | temperature | 15.0 | 720 | > th | dose independent | rect. | 1 | 5 |
| 673 | 226.21 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 18 |
| 695 | 226.25 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 6 | 11 |
| 709 | 226.29 | radiation | 20.0 | 720 | < th | dose independent | rect. | 14 | 7 |
| 713 | 226.29 | temperature | 10.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 714 | 226.30 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 727 | 226.32 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 12 | 10 |
| 732 | 226.33 | radiation | 30.0 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 784 | 226.47 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 794 | 226.50 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 825 | 226.54 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 835 | 226.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 859 | 226.60 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 869 | 226.63 | humidity | 90.0 | 270 | < th | dose independent | rect. | 21 | 2 |
| 878 | 226.65 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 879 | 226.66 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 1 | 4 |
| 884 | 226.66 | wind | 9.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 908 | 226.72 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 970 | 226.80 | humidity | 90.0 | 90 | < th | dose independent | rect. | 21 | 22 |
| 974 | 226.81 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 22 | 14 |
| 978 | 226.81 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 22 | 14 |
| 992 | 226.83 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 993 | 226.83 | wind | 9.0 | 4320 | > th | dose independent | rect. | 15 | 6 |