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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0536600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0182) R2 : 0.004
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0518 (0.0383) R2dN8 : 0.00516 R2N8 : 0.004
σ : 0.342
deviance : 53.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.82 0.338 2.87 0.0146 0.0751 0.223 0.119 1.04 0.0997 15 9.998 4316 -- --
52.15 0.336 2.89 0.103 0.137 0.27 0.0665 -- 0.12 15 10.88 4749 -- --
51.83 0.335 2.87 0.0168 0.0836 0.235 -- 1.06 0.0991 15.5 9.868 4278 -- --
52.14 0.336 2.89 0.119 0.134 0.265 -- -- 0.126 14.9 10.01 4748 -- --
52.12 0.336 2.87 0.0161 -- 0.24 -- 1.1 0.0992 -- 9.79 4239 -- --
53.22 0.342 2.9 0.0668 0.0826 -- 0.163 -- 0.0604 14.7 -- -- -- --
53.29 0.342 2.9 0.0709 0.0877 -- -- -- 0.0616 15.6 -- -- -- --
52.9 0.339 2.89 0.0934 -- 0.235 -- -- 0.108 -- 10.01 4232 -- --
52.48 0.337 2.89 -- 0.142 0.273 -- -- 0.116 15.4 10.01 4748 -- --
53.71 0.342 2.9 0.0673 -- -- -- -- 0.0592 -- -- -- -- --
53.42 0.342 2.9 -- 0.0863 -- -- -- 0.0537 15.6 -- -- -- --
53.08 0.339 2.89 -- -- 0.189 -- -- 0.102 -- 10.02 5615 -- --
53.83 0.342 2.9 -- -- -- -- -- 0.0518 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.61 temperature 25.0 30 > th dose independent rect. 20 3
3 45.98 temperature 25.0 90 > th dose dependent rect. 20 3
10 46.62 temperature 25.0 90 > th dose dependent rect. 20 8
16 46.78 radiation 40.0 43200 < th dose dependent rect. 23 1
17 46.79 temperature 25.0 10 > th dose dependent rect. 20 5
42 47.22 temperature 25.0 30 > th dose independent rect. 22 1
43 47.22 temperature 20.0 30 > th dose dependent rect. 22 1
50 47.25 atmosphere 1005.0 30 > th dose dependent rect. 22 1
51 47.26 wind 9.0 1440 < th dose independent rect. 23 1
52 47.26 temperature 10.0 1440 > th dose independent rect. 23 1
55 47.26 temperature 30.0 1440 < th dose independent rect. 23 1
59 47.26 humidity 50.0 1440 > th dose independent rect. 23 1
69 47.26 atmosphere 995.0 1440 > th dose independent rect. 23 1
70 47.26 radiation 1.0 1440 < th dose independent rect. 23 1
90 47.26 temperature 10.0 1440 > th dose independent rect. 24 23
94 47.26 radiation 1.0 1440 < th dose dependent rect. 23 1
99 47.27 wind 3.0 30 < th dose independent rect. 22 1
101 47.29 humidity 80.0 30 > th dose independent rect. 22 1
104 47.31 atmosphere 1005.0 30 > th dose independent rect. 22 1
105 47.31 wind 5.0 30 < th dose dependent rect. 22 1
114 47.37 wind 1.0 30 > th dose independent rect. 22 1
117 47.37 temperature 10.0 30 > th dose independent rect. 22 1
119 47.37 temperature 30.0 30 < th dose independent rect. 22 1
120 47.37 humidity 50.0 30 > th dose independent rect. 22 1
123 47.37 atmosphere 995.0 30 > th dose independent rect. 22 1
124 47.37 atmosphere 1010.0 30 < th dose independent rect. 22 1
126 47.37 radiation 1.0 30 < th dose independent rect. 22 1
131 47.37 temperature 10.0 30 > th dose independent rect. 23 23
132 47.37 radiation 1.0 30 < th dose dependent rect. 22 1
137 47.37 atmosphere 1005.0 30 > th dose dependent rect. 20 3
139 47.38 precipitation 0.1 30 < th dose independent rect. 22 1
140 47.38 humidity 50.0 30 > th dose dependent rect. 22 1
142 47.38 precipitation 0.1 30 < th dose dependent rect. 22 1
143 47.39 humidity 90.0 30 < th dose independent rect. 22 1
153 47.53 temperature 25.0 270 > th dose independent rect. 20 1
154 47.54 atmosphere 1015.0 30 < th dose dependent rect. 22 1
156 47.59 humidity 90.0 30 < th dose dependent rect. 22 1
171 47.70 wind 1.0 30 > th dose dependent rect. 22 1
175 47.78 temperature 10.0 1440 > th dose independent rect. 21 1
178 47.78 temperature 30.0 1440 < th dose independent rect. 21 1
182 47.78 humidity 50.0 1440 > th dose independent rect. 21 1
188 47.78 atmosphere 995.0 1440 > th dose independent rect. 21 1
189 47.78 radiation 1.0 1440 < th dose independent rect. 21 1
209 47.78 temperature 10.0 1440 > th dose independent rect. 22 23
212 47.80 radiation 30.0 1440 < th dose dependent rect. 21 1
219 47.84 radiation 40.0 14400 < th dose dependent rect. 21 1
222 47.85 temperature 30.0 30 < th dose dependent rect. 22 1
228 47.87 atmosphere 1005.0 30 > th dose dependent rect. 20 1
240 47.93 wind 3.0 30 > th dose independent rect. 20 1
241 47.93 humidity 80.0 30 > th dose independent rect. 20 1
242 47.93 humidity 90.0 30 < th dose independent rect. 20 1
244 47.94 atmosphere 1005.0 30 > th dose independent rect. 20 1
259 47.99 wind 5.0 30 < th dose independent rect. 20 1
261 47.99 wind 1.0 30 > th dose dependent rect. 20 1
265 48.01 temperature 10.0 30 > th dose independent rect. 20 1
267 48.01 temperature 30.0 30 < th dose independent rect. 20 1
268 48.01 humidity 50.0 30 > th dose independent rect. 20 1
272 48.01 atmosphere 1010.0 30 < th dose independent rect. 20 1
274 48.01 radiation 1.0 30 < th dose independent rect. 20 1
279 48.01 precipitation 0.1 30 < th dose independent rect. 20 1
280 48.01 temperature 10.0 30 > th dose independent rect. 21 23
281 48.01 radiation 1.0 30 < th dose dependent rect. 20 1
286 48.01 precipitation 0.1 30 < th dose dependent rect. 20 1
287 48.02 humidity 50.0 30 > th dose dependent rect. 20 1
289 48.03 wind 9.0 30 < th dose dependent rect. 20 1
291 48.05 wind 9.0 1440 < th dose independent rect. 21 1
296 48.08 humidity 90.0 30 < th dose dependent rect. 20 1
302 48.13 wind 9.0 30 < th dose independent rect. 21 23
308 48.16 wind 9.0 30 < th dose independent rect. 23 23
314 48.19 atmosphere 1015.0 30 < th dose dependent rect. 20 1
341 48.24 temperature 30.0 30 < th dose dependent rect. 20 1
381 48.57 atmosphere 1010.0 10 < th dose independent rect. 12 8
424 48.67 precipitation 0.1 10 < th dose independent rect. 12 8
426 48.67 precipitation 0.1 10 < th dose dependent rect. 12 8
436 48.77 humidity 80.0 30 > th dose independent rect. 20 3
437 48.77 temperature 10.0 10 > th dose independent rect. 12 8
440 48.77 temperature 10.0 10 > th dose independent rect. 20 16
441 48.77 atmosphere 995.0 10 > th dose independent rect. 20 16
442 48.77 precipitation 0.1 30 < th dose independent rect. 20 16
446 48.77 precipitation 0.1 30 < th dose dependent rect. 20 16
447 48.78 atmosphere 995.0 30 > th dose dependent rect. 12 8
449 48.79 wind 9.0 10 < th dose independent rect. 12 8
466 48.82 atmosphere 1015.0 10 < th dose independent rect. 20 16
470 48.83 temperature 10.0 1440 > th dose independent rect. 13 8
474 48.83 temperature 10.0 1440 > th dose independent rect. 21 16
477 48.83 atmosphere 995.0 1440 > th dose independent rect. 21 16
483 48.88 temperature 10.0 30 > th dose dependent rect. 12 8
489 48.90 wind 9.0 30 < th dose independent rect. 20 16
491 48.91 wind 1.0 10 > th dose independent rect. 12 8
503 48.94 atmosphere 995.0 10 > th dose independent rect. 12 8
512 49.03 humidity 90.0 30 < th dose independent rect. 20 3
513 49.03 humidity 90.0 10 < th dose independent rect. 12 8
521 49.06 atmosphere 995.0 30 > th dose independent rect. 23 23
542 49.12 humidity 50.0 10 > th dose independent rect. 12 8
570 49.23 precipitation 0.1 30 < th dose independent rect. 21 23
574 49.23 precipitation 0.1 30 < th dose dependent rect. 21 23
575 49.24 humidity 50.0 30 > th dose independent rect. 20 16
588 49.26 temperature 10.0 10 > th dose dependent rect. 2 18
618 49.45 atmosphere 1005.0 30 > th dose independent rect. 20 3
622 49.45 temperature 10.0 270 > th dose dependent rect. 1 16
623 49.46 wind 5.0 30 < th dose independent rect. 20 3
628 49.47 precipitation 0.1 30 < th dose independent rect. 23 23
630 49.47 precipitation 0.1 30 < th dose dependent rect. 23 23
636 49.49 temperature 10.0 270 > th dose dependent rect. 23 18
637 49.49 temperature 10.0 30 > th dose dependent rect. 23 21
642 49.51 wind 1.0 30 > th dose independent rect. 20 16
648 49.53 humidity 80.0 90 < th dose independent rect. 12 11
660 49.56 atmosphere 995.0 30 > th dose independent rect. 21 23
729 49.70 humidity 90.0 270 < th dose independent rect. 11 6
734 49.70 humidity 80.0 90 > th dose independent rect. 8 15
742 49.71 radiation 40.0 30 < th dose independent rect. 12 8
755 49.74 humidity 80.0 90 > th dose independent rect. 16 7
762 49.75 wind 7.0 30 < th dose dependent rect. 20 3
785 49.80 wind 1.0 30 > th dose independent rect. 9 3
786 49.80 wind 1.0 90 > th dose independent rect. 9 14
787 49.80 temperature 30.0 270 < th dose dependent rect. 7 3
849 49.91 temperature 10.0 1440 > th dose independent rect. 10 3
852 49.91 atmosphere 995.0 1440 > th dose independent rect. 10 3
855 49.91 temperature 10.0 1440 > th dose independent rect. 13 21
859 49.92 radiation 1.0 30 > th dose independent rect. 9 3
874 49.93 temperature 10.0 30 > th dose independent rect. 9 3
876 49.93 atmosphere 995.0 30 > th dose independent rect. 9 3
877 49.93 atmosphere 1015.0 30 < th dose independent rect. 9 3
878 49.93 precipitation 0.1 30 < th dose independent rect. 9 3
880 49.93 temperature 10.0 30 > th dose independent rect. 12 21
881 49.93 precipitation 0.1 30 < th dose dependent rect. 9 3
883 49.93 wind 1.0 30 > th dose dependent rect. 12 8
905 49.96 temperature 25.0 10 > th dose independent rect. 17 8
906 49.96 humidity 50.0 90 > th dose independent rect. 9 14
913 49.97 wind 9.0 30 < th dose independent rect. 12 21
929 50.00 atmosphere 1015.0 270 < th dose independent rect. 7 14
930 50.00 precipitation 0.1 30 < th dose independent rect. 12 21
935 50.00 precipitation 0.1 30 < th dose dependent rect. 12 21
939 50.01 temperature 25.0 10 > th dose independent rect. 17 11
955 50.02 atmosphere 995.0 30 > th dose independent rect. 12 21
968 50.04 wind 9.0 30 < th dose independent rect. 9 3
971 50.04 radiation 40.0 90 < th dose independent rect. 23 10
979 50.05 precipitation 0.1 270 < th dose independent rect. 21 10
981 50.05 humidity 50.0 270 > th dose dependent rect. 7 3
983 50.05 precipitation 0.1 270 < th dose dependent rect. 21 10
989 50.06 temperature 10.0 270 > th dose independent rect. 21 10
990 50.06 temperature 30.0 270 < th dose independent rect. 21 10
991 50.06 humidity 50.0 270 > th dose independent rect. 21 10
993 50.06 atmosphere 995.0 270 > th dose independent rect. 21 10
994 50.06 radiation 30.0 270 < th dose independent rect. 21 10
997 50.06 temperature 10.0 270 > th dose independent rect. 7 14