Os01g0536400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Isopenicillin N synthase family protein.
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Os01g0536400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Isopenicillin N synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.14 | 0.56 | 7.5 | 1.44 | 0.862 | -1.53 | -0.907 | -2.56 | -0.348 | 17.4 | 25.45 | 526 | -- | -- |
| 149.36 | 0.574 | 7.56 | 1.03 | 0.969 | -1.36 | 0.236 | -- | -0.442 | 19.2 | 25.45 | 526 | -- | -- |
| 143.54 | 0.558 | 7.52 | 1.3 | 0.839 | -1.54 | -- | -1.83 | -0.393 | 18 | 25.31 | 396 | -- | -- |
| 145.75 | 0.562 | 7.56 | 0.975 | 0.784 | -1.45 | -- | -- | -0.471 | 18.7 | 26.13 | 257 | -- | -- |
| 164.92 | 0.598 | 7.54 | 1.1 | -- | -1.97 | -- | -1.44 | -0.515 | -- | 28.94 | 383 | -- | -- |
| 176.64 | 0.623 | 7.5 | 1.34 | 1.05 | -- | -0.156 | -- | -0.158 | 18 | -- | -- | -- | -- |
| 176.7 | 0.622 | 7.5 | 1.34 | 1.05 | -- | -- | -- | -0.159 | 18 | -- | -- | -- | -- |
| 166.92 | 0.602 | 7.57 | 0.843 | -- | -1.96 | -- | -- | -0.566 | -- | 29.73 | 360 | -- | -- |
| 168.23 | 0.604 | 7.61 | -- | 0.722 | -1.79 | -- | -- | -0.632 | 18.6 | 26.12 | 315 | -- | -- |
| 233.39 | 0.714 | 7.48 | 1.31 | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
| 224.18 | 0.7 | 7.53 | -- | 1.03 | -- | -- | -- | -0.309 | 18.1 | -- | -- | -- | -- |
| 183.88 | 0.632 | 7.6 | -- | -- | -2.23 | -- | -- | -0.728 | -- | 28.75 | 359 | -- | -- |
| 278.78 | 0.779 | 7.51 | -- | -- | -- | -- | -- | -0.329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 2 | 141.40 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 13 | 142.68 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 18 | 143.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 21 | 143.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 22 | 143.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 40 | 143.46 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 44 | 143.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 66 | 143.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 111 | 144.25 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 116 | 144.31 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 182 | 145.00 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 240 | 145.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 310 | 146.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 374 | 146.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 389 | 146.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 407 | 146.82 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 503 | 147.33 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 529 | 147.52 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 606 | 147.86 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 12 |
| 619 | 147.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 643 | 148.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 654 | 148.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 664 | 148.16 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 694 | 148.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 737 | 148.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 767 | 148.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 852 | 148.48 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 958 | 148.59 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 9 |
| 998 | 148.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |