Os01g0535400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os01g0535400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.98 | 0.46 | 7.68 | -2.87 | 0.372 | -2.4 | 0.0971 | 0.483 | 0.124 | 3.39 | 24.3 | 1457 | -- | -- |
| 96.05 | 0.456 | 7.67 | -2.8 | 0.368 | -2.46 | 0.145 | -- | 0.151 | 3.32 | 24 | 1453 | -- | -- |
| 95.91 | 0.456 | 7.68 | -2.87 | 0.378 | -2.44 | -- | 0.404 | 0.13 | 3.4 | 24.03 | 1453 | -- | -- |
| 96.01 | 0.456 | 7.67 | -2.8 | 0.374 | -2.52 | -- | -- | 0.153 | 3.44 | 23.83 | 1453 | -- | -- |
| 102.12 | 0.471 | 7.68 | -2.86 | -- | -2.39 | -- | 0.494 | 0.121 | -- | 24.54 | 1261 | -- | -- |
| 172.69 | 0.616 | 7.56 | -2.06 | 0.441 | -- | -0.00168 | -- | 0.625 | 3.46 | -- | -- | -- | -- |
| 172.69 | 0.615 | 7.56 | -2.06 | 0.441 | -- | -- | -- | 0.625 | 3.46 | -- | -- | -- | -- |
| 102.35 | 0.471 | 7.67 | -2.77 | -- | -2.47 | -- | -- | 0.15 | -- | 24.21 | 1271 | -- | -- |
| 267.32 | 0.761 | 7.54 | -- | 0.429 | -1.05 | -- | -- | 0.694 | 4.39 | 24.2 | 519 | -- | -- |
| 183.61 | 0.633 | 7.56 | -2.04 | -- | -- | -- | -- | 0.637 | -- | -- | -- | -- | -- |
| 284.88 | 0.79 | 7.51 | -- | 0.401 | -- | -- | -- | 0.855 | 3.48 | -- | -- | -- | -- |
| 274.6 | 0.772 | 7.55 | -- | -- | -1.06 | -- | -- | 0.673 | -- | 25 | 1115 | -- | -- |
| 293.88 | 0.8 | 7.51 | -- | -- | -- | -- | -- | 0.864 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.92 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 2 | 94.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 14 |
| 25 | 95.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 34 | 95.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 35 | 95.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 36 | 95.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 201 | 96.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 208 | 96.62 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 234 | 96.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 239 | 96.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 9 |
| 312 | 97.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 476 | 98.55 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 637 | 99.55 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 873 | 100.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 888 | 100.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 929 | 101.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 10 |