Os01g0532800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Barren family protein.
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Os01g0532800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Barren family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.1 | 0.37 | 6.64 | 0.891 | 0.3 | -0.442 | -0.3 | 1.49 | 0.0792 | 18.4 | 9.92 | 9289 | -- | -- |
| 66.21 | 0.379 | 6.64 | 0.898 | 0.303 | -0.435 | -0.459 | -- | 0.0714 | 18.4 | 9.987 | 9163 | -- | -- |
| 62.3 | 0.368 | 6.64 | 0.895 | 0.3 | -0.443 | -- | 1.52 | 0.0792 | 18.2 | 9.933 | 9289 | -- | -- |
| 66.07 | 0.379 | 6.68 | 0.941 | 0.299 | -0.486 | -- | -- | 0.0757 | 18.3 | 9.102 | 9170 | -- | -- |
| 66.57 | 0.38 | 6.64 | 0.869 | -- | -0.501 | -- | 1.59 | 0.0769 | -- | 8.046 | 9385 | -- | -- |
| 69.74 | 0.391 | 6.67 | 0.76 | 0.36 | -- | -0.454 | -- | 0.134 | 18.2 | -- | -- | -- | -- |
| 70.22 | 0.392 | 6.67 | 0.766 | 0.359 | -- | -- | -- | 0.133 | 18.1 | -- | -- | -- | -- |
| 69.99 | 0.39 | 6.68 | 0.989 | -- | -0.531 | -- | -- | 0.0638 | -- | 8.933 | 7909 | -- | -- |
| 83.4 | 0.425 | 6.7 | -- | 0.34 | -0.253 | -- | -- | -0.0426 | 18.1 | 20 | 7550 | -- | -- |
| 76.9 | 0.41 | 6.66 | 0.756 | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
| 85.69 | 0.433 | 6.69 | -- | 0.348 | -- | -- | -- | 0.0475 | 18.2 | -- | -- | -- | -- |
| 86.93 | 0.434 | 6.69 | -- | -- | -0.322 | -- | -- | 0.00521 | -- | 13.05 | 6492 | -- | -- |
| 91.97 | 0.448 | 6.68 | -- | -- | -- | -- | -- | 0.0409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.38 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 41 | 60.78 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 45 | 60.81 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 53 | 60.88 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 68 | 61.01 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 87 | 61.07 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 96 | 61.14 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 97 | 61.15 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 98 | 61.15 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 100 | 61.17 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 105 | 61.18 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 113 | 61.19 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 114 | 61.19 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 122 | 61.19 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 12 | NA |
| 133 | 61.21 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 135 | 61.21 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 141 | 61.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 165 | 61.24 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 167 | 61.24 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 168 | 61.24 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 172 | 61.24 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 24 | 7 |
| 185 | 61.25 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 214 | 61.25 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 346 | 61.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 353 | 61.30 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 396 | 61.32 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 403 | 61.32 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 4 |
| 430 | 61.34 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 689 | 61.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 694 | 61.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 743 | 61.58 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 770 | 61.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 774 | 61.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 10 |
| 784 | 61.62 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 844 | 61.69 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 845 | 61.69 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 855 | 61.70 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 895 | 61.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 899 | 61.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 953 | 61.79 | atmosphere | 1005.0 | 43200 | < th | dose dependent | no | NA | NA |