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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0532700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.29 (0.0486) R2 : 0.319
β1 : 0.918 (0.182) R2dD : 0.0408 R2D : -0.0226
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.761 (0.145) R2dE : 0.0501 R2E : 0.0795
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.11 (0.109) R2dN8 : 0.232 R2N8 : 0.209
σ : 0.893
deviance : 367.85
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.3
memory length : 649
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
356.18 0.887 4.26 1.25 0.544 0.717 0.763 1.1 1.22 23.3 20.96 48 -- --
362.28 0.893 4.28 0.972 0.551 0.633 0.177 -- 1.16 23.3 21.5 60 -- --
358.3 0.882 4.25 1.18 0.543 0.69 -- 0.854 1.24 23.2 21 47 -- --
361.35 0.885 4.28 0.963 0.492 0.724 -- -- 1.18 23.3 20.59 113 -- --
374.66 0.902 4.25 1.23 -- 0.549 -- 0.796 1.24 -- 21 47 -- --
382.09 0.916 4.25 1.17 0.368 -- 0.248 -- 1.32 22.1 -- -- -- --
382.31 0.916 4.25 1.16 0.366 -- -- -- 1.32 22.3 -- -- -- --
367.85 0.893 4.29 0.918 -- 0.761 -- -- 1.11 -- 21.3 649 -- --
384.61 0.913 4.31 -- 0.535 0.891 -- -- 1.04 23.6 20.56 113 -- --
390.48 0.923 4.24 1.17 -- -- -- -- 1.32 -- -- -- -- --
417.86 0.956 4.27 -- 0.373 -- -- -- 1.19 22.5 -- -- -- --
387.01 0.916 4.32 -- -- 0.985 -- -- 0.963 -- 21.2 649 -- --
426.41 0.964 4.26 -- -- -- -- -- 1.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 357.99 radiation 20.0 4320 > th dose independent rect. 6 1
15 358.59 temperature 20.0 270 < th dose dependent rect. 9 21
16 358.70 temperature 20.0 270 > th dose independent rect. 21 11
18 358.87 temperature 25.0 90 < th dose dependent rect. 24 23
19 358.89 temperature 20.0 10 < th dose independent rect. 24 22
22 359.10 temperature 25.0 30 < th dose dependent rect. 18 19
25 359.15 temperature 20.0 720 > th dose independent rect. 21 5
32 359.24 temperature 25.0 30 < th dose dependent rect. 11 22
38 359.29 precipitation 0.1 14400 < th dose independent rect. 17 1
39 359.29 precipitation 0.1 14400 < th dose dependent rect. 17 1
51 359.49 temperature 30.0 30 < th dose dependent rect. 18 14
53 359.50 temperature 20.0 720 > th dose independent rect. 14 12
60 359.59 temperature 15.0 270 > th dose dependent rect. 21 11
61 359.60 temperature 20.0 270 < th dose dependent rect. 18 12
69 359.72 precipitation 0.1 14400 > th dose independent rect. 17 1
78 359.85 temperature 20.0 90 < th dose independent rect. 24 23
87 359.98 humidity 90.0 14400 > th dose dependent rect. 18 10
88 359.98 humidity 90.0 14400 > th dose dependent rect. 17 12
97 360.13 radiation 10.0 4320 < th dose dependent rect. 9 2
115 360.29 wind 1.0 10 < th dose dependent rect. 1 1
116 360.30 wind 1.0 10 < th dose independent rect. 1 1
117 360.30 temperature 20.0 270 < th dose dependent sin 10 NA
121 360.33 humidity 80.0 43200 > th dose dependent rect. 13 1
155 360.61 humidity 90.0 14400 > th dose dependent rect. 18 14
161 360.66 humidity 80.0 43200 > th dose dependent rect. 11 5
186 360.79 humidity 90.0 14400 > th dose dependent sin 12 NA
221 360.94 temperature 20.0 90 < th dose independent rect. 18 22
223 360.94 temperature 25.0 30 < th dose dependent rect. 14 23
270 361.09 temperature 25.0 30 < th dose dependent no NA NA
285 361.14 temperature 25.0 30 < th dose dependent rect. 7 23
289 361.15 temperature 25.0 30 < th dose dependent rect. 21 23
294 361.17 radiation 40.0 1440 > th dose dependent rect. 15 18
298 361.19 temperature 20.0 270 < th dose dependent no NA NA
316 361.24 temperature 10.0 720 > th dose dependent rect. 21 5
328 361.31 temperature 25.0 30 < th dose dependent rect. 3 23
334 361.36 temperature 20.0 270 < th dose dependent rect. 21 23
338 361.38 temperature 20.0 270 < th dose independent rect. 18 13
340 361.41 temperature 20.0 10 > th dose independent rect. 14 23
370 361.54 temperature 20.0 270 < th dose dependent rect. 3 23
382 361.59 wind 9.0 43200 > th dose independent rect. 18 1
385 361.60 temperature 20.0 10 > th dose independent rect. 21 23
396 361.66 temperature 20.0 90 < th dose independent rect. 18 19
417 361.72 temperature 25.0 30 < th dose dependent rect. 5 23
458 361.91 humidity 90.0 14400 > th dose dependent rect. 2 8
464 361.93 wind 9.0 43200 < th dose independent rect. 18 1
467 361.94 temperature 20.0 10 > th dose independent rect. 14 15
524 362.16 temperature 20.0 90 > th dose independent sin 7 NA
531 362.18 temperature 20.0 30 > th dose independent rect. 1 16
537 362.20 temperature 25.0 720 < th dose dependent rect. 19 3
546 362.23 temperature 25.0 720 < th dose dependent rect. 20 1
553 362.26 radiation 40.0 1440 > th dose dependent rect. 8 1
589 362.36 temperature 20.0 270 > th dose independent sin 10 NA
592 362.39 temperature 20.0 10 > th dose independent rect. 23 23
627 362.51 temperature 20.0 10 < th dose independent rect. 24 13
647 362.58 precipitation 0.1 14400 > th dose dependent rect. 17 1
663 362.61 temperature 20.0 10 < th dose independent rect. 24 17
670 362.63 temperature 20.0 10 > th dose independent rect. 1 23
691 362.69 temperature 20.0 720 > th dose independent rect. 23 1
692 362.69 temperature 20.0 10 < th dose independent rect. 19 18
694 362.70 humidity 90.0 14400 > th dose dependent rect. 24 21
713 362.78 temperature 20.0 270 < th dose independent rect. 21 10
731 362.81 humidity 90.0 14400 > th dose dependent rect. 23 2
741 362.85 temperature 20.0 10 < th dose independent rect. 19 22
768 362.91 temperature 20.0 270 < th dose independent sin 10 NA
771 362.91 temperature 20.0 90 < th dose independent rect. 10 22
788 362.95 wind 1.0 10 < th dose independent rect. 21 5
795 362.96 wind 1.0 10 < th dose independent rect. 15 11
807 362.99 temperature 20.0 90 < th dose independent rect. 24 16
808 362.99 temperature 20.0 10 > th dose independent rect. 1 19
815 363.00 temperature 20.0 90 > th dose independent rect. 23 23
819 363.01 precipitation 0.1 14400 < th dose independent rect. 14 1
821 363.01 precipitation 0.1 14400 < th dose dependent rect. 14 1
840 363.05 temperature 20.0 10 < th dose independent rect. 24 9
877 363.13 humidity 90.0 43200 > th dose independent rect. 11 6
883 363.14 temperature 20.0 90 < th dose independent sin 7 NA
886 363.15 temperature 20.0 10 > th dose independent sin 7 NA
887 363.15 atmosphere 995.0 14400 > th dose independent rect. 12 1
893 363.17 temperature 20.0 720 > th dose independent sin 16 NA
895 363.17 wind 1.0 270 < th dose dependent rect. 21 5
904 363.20 temperature 20.0 10 < th dose independent rect. 19 14
909 363.21 humidity 90.0 14400 > th dose dependent no NA NA
910 363.21 wind 1.0 270 < th dose dependent rect. 17 9
919 363.23 humidity 90.0 1440 > th dose dependent rect. 2 18
970 363.34 humidity 90.0 1440 > th dose dependent rect. 2 14
985 363.36 humidity 80.0 43200 > th dose dependent rect. 15 1