Os01g0531400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF642 family protein.
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Os01g0531400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF642 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 297.12 | 0.81 | 8.78 | -4.06 | 1.5 | 2.3 | 0.557 | -9.81 | -0.636 | 23.2 | 28.29 | 1186 | -- | -- |
| 319.96 | 0.833 | 8.61 | -2.08 | 1.59 | 1.23 | 0.618 | -- | -0.535 | 23.2 | 26.49 | 2631 | -- | -- |
| 298.06 | 0.804 | 8.76 | -3.92 | 1.5 | 2.17 | -- | -8.55 | -0.665 | 23.1 | 28.01 | 1204 | -- | -- |
| 306.39 | 0.815 | 8.56 | -2.14 | 1.51 | 1.24 | -- | -- | -0.431 | 22.9 | 27.91 | 1194 | -- | -- |
| 393.81 | 0.924 | 8.82 | -3.88 | -- | 2.91 | -- | -7.56 | -1.13 | -- | 24.7 | 963 | -- | -- |
| 369.89 | 0.902 | 8.58 | -1.78 | 1.72 | -- | 0.672 | -- | -0.502 | 23.3 | -- | -- | -- | -- |
| 371.8 | 0.903 | 8.58 | -1.81 | 1.72 | -- | -- | -- | -0.504 | 23.3 | -- | -- | -- | -- |
| 409.38 | 0.942 | 8.59 | -2.36 | -- | 2.21 | -- | -- | -0.722 | -- | 24.59 | 968 | -- | -- |
| 417.68 | 0.952 | 8.45 | -- | 1.45 | 0.961 | -- | -- | -0.0545 | 23.1 | 31.93 | 1057 | -- | -- |
| 556.83 | 1.1 | 8.54 | -1.76 | -- | -- | -- | -- | -0.488 | -- | -- | -- | -- | -- |
| 457.88 | 1 | 8.53 | -- | 1.7 | -- | -- | -- | -0.303 | 23.2 | -- | -- | -- | -- |
| 546.57 | 1.09 | 8.51 | -- | -- | 1.7 | -- | -- | -0.393 | -- | 24.86 | 953 | -- | -- |
| 638.94 | 1.18 | 8.49 | -- | -- | -- | -- | -- | -0.292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 285.90 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 2 | 286.30 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 3 | 286.93 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 5 | 287.76 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 20 | 288.04 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 47 | 291.17 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 58 | 293.26 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 62 | 293.42 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 78 | 294.55 | temperature | 10 | 90 | > th | dose dependent | rect. | 15 | 14 |
| 82 | 295.27 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 85 | 295.56 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 94 | 296.56 | humidity | 90 | 90 | > th | dose independent | rect. | 3 | 2 |
| 96 | 296.66 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 6 |
| 105 | 297.70 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 107 | 297.75 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 120 | 298.03 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 15 |
| 124 | 298.30 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 2 |
| 131 | 298.68 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 150 | 299.13 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 13 |
| 157 | 299.38 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 162 | 299.50 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 173 | 299.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 179 | 299.80 | humidity | 70 | 720 | > th | dose independent | sin | 11 | NA |
| 184 | 300.22 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 9 |
| 188 | 300.41 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 2 |
| 197 | 300.74 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 214 | 301.14 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 219 | 301.22 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 221 | 301.23 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 239 | 301.28 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 255 | 301.42 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 18 |
| 259 | 301.46 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 283 | 301.59 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 322 | 302.20 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 341 | 302.29 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 360 | 302.42 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 361 | 302.42 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 21 |
| 364 | 302.48 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 396 | 302.87 | humidity | 50 | 90 | > th | dose dependent | rect. | 6 | 9 |
| 462 | 303.37 | temperature | 10 | 10 | > th | dose dependent | rect. | 15 | 15 |
| 464 | 303.39 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 467 | 303.41 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 20 |
| 470 | 303.46 | wind | 5 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 472 | 303.48 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 485 | 303.56 | wind | 5 | 43200 | > th | dose dependent | sin | 17 | NA |
| 497 | 303.63 | wind | 5 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 508 | 303.68 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 20 |
| 530 | 303.82 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 13 |
| 535 | 303.84 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 558 | 303.96 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 18 |
| 659 | 304.37 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 706 | 304.51 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 731 | 304.56 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 769 | 304.65 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 4 |
| 777 | 304.67 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 22 |
| 779 | 304.69 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 811 | 304.78 | humidity | 70 | 30 | > th | dose independent | rect. | 6 | 20 |
| 904 | 304.96 | humidity | 90 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 981 | 305.19 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |