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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0528000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.2 (0.0275) R2 : 0.489
β1 : 1.76 (0.101) R2dD : 0.355 R2D : 0.346
β2 : 0.768 (0.0681) R2dC : 0.143 R2C : 0.132
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0142 (0.0588) R2dN8 : 8.73e-05 R2N8 : 0.00208
σ : 0.518
deviance : 122.28
__
_____
C
peak time of C : 14.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.71 0.464 4.04 3 0.768 -0.77 0.669 3.59 0.407 15 19.09 1577 -- --
104.21 0.475 4.13 2.41 0.725 -1.02 0.542 -- 0.326 14.9 10.92 10899 -- --
99.07 0.464 4.04 3.04 0.782 -0.788 -- 3.7 0.417 15 19.05 1674 -- --
105.44 0.478 4.12 2.39 0.726 -1.02 -- -- 0.313 14.9 9.159 10883 -- --
128.29 0.528 4.03 3.1 -- -0.963 -- 3.51 0.431 -- 21.14 2577 -- --
120.86 0.515 4.2 1.75 0.767 -- 0.647 -- -0.0179 14.9 -- -- -- --
122.28 0.518 4.2 1.76 0.768 -- -- -- -0.0142 14.8 -- -- -- --
135.67 0.542 4.12 2.43 -- -1.13 -- -- 0.33 -- 7.658 11103 -- --
167.75 0.603 4.37 -- 0.844 1.06 -- -- -0.565 15.4 16.3 47520 -- --
156.41 0.584 4.2 1.73 -- -- -- -- -0.0339 -- -- -- -- --
204.07 0.668 4.24 -- 0.734 -- -- -- -0.21 14.8 -- -- -- --
200.11 0.659 4.31 -- -- 0.908 -- -- -0.527 -- 16.75 47520 -- --
235.25 0.716 4.24 -- -- -- -- -- -0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.48 radiation 1 4320 < th dose independent rect. 18 11
2 91.67 radiation 1 4320 > th dose independent rect. 18 11
4 92.01 radiation 1 4320 < th dose independent rect. 18 2
6 92.06 radiation 1 4320 < th dose independent rect. 18 8
13 92.20 radiation 1 4320 > th dose independent rect. 18 1
23 92.51 wind 3 43200 < th dose dependent rect. 24 4
25 92.90 humidity 90 14400 > th dose independent rect. 18 14
29 93.09 wind 3 43200 < th dose independent rect. 24 4
31 93.13 radiation 1 4320 < th dose independent rect. 18 17
34 93.18 radiation 1 4320 > th dose independent rect. 18 16
38 93.28 radiation 30 4320 < th dose independent rect. 17 16
41 93.31 radiation 30 4320 < th dose independent rect. 2 7
47 93.33 radiation 30 4320 < th dose independent rect. 5 4
50 93.33 radiation 30 4320 < th dose independent rect. 22 11
58 93.35 humidity 90 14400 < th dose independent rect. 18 14
63 93.38 wind 9 43200 < th dose dependent rect. 24 3
69 93.43 humidity 90 14400 > th dose dependent rect. 19 7
72 93.47 humidity 90 14400 < th dose independent rect. 19 7
75 93.48 humidity 90 14400 > th dose independent sin 12 NA
91 93.61 humidity 90 14400 > th dose dependent rect. 16 16
127 93.74 wind 1 43200 > th dose dependent rect. 23 15
131 93.75 humidity 90 14400 > th dose dependent sin 13 NA
137 93.76 wind 3 43200 < th dose independent rect. 24 7
144 93.77 wind 3 43200 < th dose independent rect. 24 14
154 93.81 wind 5 43200 < th dose dependent rect. 24 14
158 93.83 humidity 90 43200 < th dose independent rect. 6 2
162 93.83 humidity 90 14400 > th dose dependent rect. 16 12
185 93.90 humidity 90 14400 < th dose independent sin 12 NA
187 93.90 wind 9 43200 < th dose dependent rect. 23 15
196 93.91 radiation 30 4320 > th dose dependent rect. 16 17
207 93.93 humidity 80 43200 > th dose dependent rect. 7 3
210 93.94 wind 3 43200 > th dose independent rect. 24 4
213 93.94 wind 3 43200 > th dose independent rect. 24 14
227 93.97 radiation 30 4320 > th dose dependent rect. 7 2
244 93.98 humidity 80 14400 > th dose dependent rect. 22 1
270 94.04 wind 3 43200 > th dose independent rect. 12 1
276 94.05 wind 3 43200 > th dose independent rect. 24 7
292 94.08 wind 1 43200 > th dose dependent rect. 24 3
320 94.14 wind 3 43200 < th dose independent rect. 11 2
350 94.20 wind 1 43200 > th dose dependent rect. 23 8
371 94.22 humidity 90 43200 > th dose independent rect. 6 1
392 94.26 wind 1 43200 > th dose dependent sin 5 NA
456 94.38 wind 9 43200 < th dose dependent rect. 23 8
485 94.43 wind 5 43200 < th dose dependent rect. 23 8
505 94.46 humidity 90 14400 > th dose independent rect. 1 9
512 94.47 wind 9 43200 < th dose dependent sin 5 NA
533 94.50 wind 1 43200 > th dose dependent rect. 4 10
559 94.53 wind 5 43200 < th dose dependent rect. 4 10
566 94.54 radiation 1 4320 > th dose dependent rect. 18 11
572 94.55 wind 5 43200 < th dose dependent sin 5 NA
616 94.61 wind 3 43200 < th dose independent sin 5 NA
639 94.64 humidity 90 14400 > th dose dependent no NA NA
670 94.69 humidity 90 14400 > th dose dependent rect. 24 23
671 94.70 radiation 1 14400 < th dose independent rect. 5 1
680 94.71 wind 3 43200 > th dose independent sin 5 NA
693 94.72 wind 9 43200 < th dose dependent rect. 4 10
702 94.74 radiation 1 14400 > th dose independent rect. 5 1
716 94.75 humidity 90 14400 > th dose dependent rect. 3 23
717 94.75 humidity 90 14400 > th dose dependent rect. 6 23
732 94.77 wind 5 43200 < th dose dependent rect. 11 2
838 94.88 humidity 90 14400 > th dose independent rect. 4 4
902 94.96 radiation 30 4320 > th dose independent rect. 16 17
935 95.00 humidity 80 43200 > th dose independent rect. 9 2
953 95.01 humidity 90 14400 < th dose independent rect. 24 10
957 95.01 radiation 10 4320 < th dose dependent rect. 18 11
1000 95.05 radiation 30 4320 > th dose independent rect. 7 2