Os01g0525700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0525700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 292.48 | 0.804 | 11.2 | -0.557 | 2.3 | 1.5 | -1.75 | 0.292 | -1.45 | 10.3 | 18.6 | 6 | -- | -- |
| 292.3 | 0.796 | 11.2 | -0.612 | 2.29 | 1.51 | -1.68 | -- | -1.46 | 10.3 | 18.59 | 3 | -- | -- |
| 302.12 | 0.816 | 11.3 | -0.873 | 2.3 | 1.55 | -- | -1.25 | -1.52 | 10.4 | 18.6 | 6 | -- | -- |
| 303.72 | 0.812 | 11.2 | -0.68 | 2.31 | 1.5 | -- | -- | -1.47 | 10.4 | 18.01 | 3 | -- | -- |
| 587.88 | 1.14 | 11.4 | -1.29 | -- | 2.92 | -- | -1.95 | -1.77 | -- | 18.6 | 6 | -- | -- |
| 324.89 | 0.845 | 11.2 | -0.292 | 2.61 | -- | -1.47 | -- | -1.21 | 11 | -- | -- | -- | -- |
| 334 | 0.856 | 11.2 | -0.351 | 2.62 | -- | -- | -- | -1.21 | 11 | -- | -- | -- | -- |
| 590.74 | 1.13 | 11.3 | -0.994 | -- | 2.91 | -- | -- | -1.69 | -- | 17.91 | 2 | -- | -- |
| 314.54 | 0.831 | 11.2 | -- | 2.36 | 1.24 | -- | -- | -1.35 | 10.5 | 18.5 | 3 | -- | -- |
| 760.25 | 1.29 | 11.2 | -0.41 | -- | -- | -- | -- | -1.23 | -- | -- | -- | -- | -- |
| 337.25 | 0.859 | 11.2 | -- | 2.62 | -- | -- | -- | -1.17 | 11 | -- | -- | -- | -- |
| 615.15 | 1.16 | 11.3 | -- | -- | 2.59 | -- | -- | -1.54 | -- | 18.6 | 2 | -- | -- |
| 764.69 | 1.29 | 11.2 | -- | -- | -- | -- | -- | -1.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 284.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 2 | 284.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 3 | 284.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 13 | 285.13 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 31 | 285.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 33 | 286.03 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 46 | 286.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 50 | 286.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 53 | 286.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 59 | 286.85 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 64 | 286.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 126 | 288.44 | temperature | 25 | 10 | < th | dose independent | rect. | 12 | 22 |
| 179 | 289.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 22 |
| 186 | 289.25 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 19 |
| 251 | 289.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 282 | 290.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 293 | 290.22 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 298 | 290.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 317 | 290.36 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 319 | 290.38 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 387 | 290.84 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 394 | 290.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 430 | 291.09 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 444 | 291.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 455 | 291.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 456 | 291.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 17 |
| 486 | 291.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 497 | 291.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 527 | 291.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 533 | 291.65 | temperature | 25 | 30 | > th | dose independent | rect. | 17 | 16 |
| 541 | 291.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 549 | 291.72 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 569 | 291.80 | temperature | 25 | 4320 | < th | dose independent | sin | 13 | NA |
| 588 | 291.88 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 602 | 291.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 22 |
| 610 | 291.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 624 | 292.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 658 | 292.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 717 | 292.35 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 742 | 292.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 18 |
| 792 | 292.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 806 | 292.61 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 897 | 292.83 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 17 |
| 917 | 292.89 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 920 | 292.89 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 983 | 293.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 20 |