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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0525500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0289) R2 : 0.000358
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0246 (0.0609) R2dN8 : 0.000463 R2N8 : 0.000358
σ : 0.545
deviance : 136.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.52 0.537 2.94 -0.337 0.0846 -0.434 -0.16 1.06 -0.126 13.5 70.15 3597 -- --
131.87 0.535 2.93 -0.256 0.0708 -0.35 -0.125 -- -0.0916 13.4 70.71 3417 -- --
130.41 0.532 2.94 -0.353 0.053 -0.44 -- 1.07 -0.128 13.1 70 3417 -- --
131.89 0.535 2.94 -0.271 0.0556 -0.35 -- -- -0.0982 15.9 70 3425 -- --
130.58 0.532 2.94 -0.357 -- -0.438 -- 1.08 -0.129 -- 70 3411 -- --
133.85 0.542 2.92 -0.235 0.105 -- -0.392 -- -0.0467 16.8 -- -- -- --
134.25 0.543 2.92 -0.236 0.103 -- -- -- -0.0486 16.5 -- -- -- --
132.12 0.535 2.94 -0.263 -- -0.347 -- -- -0.0978 -- 70 3410 -- --
133.03 0.537 2.94 -- 0.0654 -0.404 -- -- -0.0935 15.9 68 9446 -- --
134.81 0.543 2.92 -0.24 -- -- -- -- -0.0513 -- -- -- -- --
135.72 0.545 2.92 -- 0.107 -- -- -- -0.0223 16.5 -- -- -- --
133.49 0.538 2.93 -- -- -0.391 -- -- -0.0794 -- 68 9413 -- --
136.34 0.545 2.92 -- -- -- -- -- -0.0246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.00 temperature 30.0 10 > th dose independent rect. 13 1
5 122.59 humidity 60.0 30 < th dose independent rect. 18 1
23 123.44 radiation 1.0 30 > th dose independent rect. 18 1
34 123.61 radiation 20.0 10 > th dose independent rect. 13 1
36 123.72 humidity 60.0 30 < th dose dependent rect. 18 1
51 123.74 temperature 30.0 10 > th dose independent rect. 13 6
67 123.80 wind 1.0 90 < th dose dependent rect. 13 2
76 124.78 temperature 30.0 30 > th dose dependent rect. 18 1
93 125.02 radiation 1.0 30 > th dose dependent rect. 18 1
104 125.09 wind 1.0 90 < th dose independent rect. 13 2
109 126.57 atmosphere 1000.0 10 < th dose independent rect. 19 3
114 126.57 atmosphere 1000.0 10 < th dose dependent rect. 19 3
162 127.18 wind 1.0 90 < th dose dependent rect. 20 1
182 127.92 temperature 25.0 30 > th dose dependent rect. 13 1
183 128.09 humidity 80.0 30 < th dose independent rect. 13 1
187 128.32 radiation 10.0 10 > th dose dependent rect. 13 1
191 128.66 temperature 30.0 30 > th dose independent rect. 18 1
221 128.75 wind 9.0 10 > th dose independent rect. 13 1
233 128.75 wind 9.0 10 > th dose dependent rect. 13 1
265 128.94 wind 1.0 10 < th dose dependent rect. 3 2
297 129.14 wind 1.0 90 < th dose independent rect. 17 4
299 129.16 wind 1.0 90 < th dose independent rect. 20 1
305 129.24 humidity 90.0 10 < th dose dependent rect. 13 1
317 129.38 temperature 30.0 30 < th dose independent rect. 17 23
320 129.39 wind 1.0 10 < th dose dependent rect. 3 7
333 129.50 wind 3.0 30 > th dose dependent rect. 18 1
335 129.51 wind 3.0 30 > th dose independent rect. 18 1
355 129.63 atmosphere 1010.0 30 < th dose dependent rect. 18 1
366 129.70 radiation 40.0 14400 > th dose independent rect. 7 1
382 129.70 radiation 40.0 14400 > th dose dependent rect. 7 1
403 129.77 wind 1.0 720 < th dose dependent rect. 8 1
406 129.79 radiation 40.0 1440 > th dose dependent rect. 8 1
450 129.96 wind 1.0 4320 < th dose dependent rect. 3 2
467 129.97 radiation 10.0 4320 > th dose independent rect. 10 2
477 130.00 temperature 30.0 10 > th dose independent sin 14 NA
496 130.04 wind 1.0 43200 > th dose independent rect. 1 1
501 130.08 wind 7.0 43200 < th dose dependent rect. 1 1
504 130.09 radiation 20.0 4320 < th dose independent rect. 23 8
506 130.10 atmosphere 1005.0 10 > th dose independent rect. 18 1
508 130.11 temperature 15.0 30 > th dose independent rect. 14 23
517 130.12 wind 1.0 43200 < th dose independent rect. 1 1
518 130.12 radiation 1.0 4320 < th dose independent rect. 18 14
519 130.12 temperature 30.0 30 < th dose independent rect. 21 23
522 130.13 wind 9.0 14400 > th dose dependent rect. 9 1
526 130.13 wind 1.0 43200 > th dose dependent rect. 22 5
534 130.14 wind 1.0 43200 > th dose dependent rect. 1 1
537 130.14 wind 9.0 43200 < th dose dependent rect. 22 5
554 130.15 wind 9.0 270 > th dose dependent rect. 16 2
560 130.17 humidity 70.0 4320 > th dose independent rect. 10 1
566 130.20 radiation 10.0 14400 > th dose independent rect. 12 2
586 130.21 wind 5.0 30 < th dose independent rect. 18 1
587 130.21 wind 9.0 270 > th dose independent rect. 16 2
593 130.22 wind 5.0 10 > th dose independent rect. 20 1
598 130.23 radiation 20.0 4320 < th dose independent rect. 5 2
601 130.23 radiation 1.0 4320 > th dose independent rect. 18 14
603 130.23 wind 1.0 43200 < th dose dependent rect. 17 2
608 130.24 radiation 20.0 4320 < th dose independent rect. 19 12
617 130.24 wind 1.0 90 < th dose dependent rect. 13 8
627 130.25 wind 1.0 720 < th dose independent rect. 8 1
628 130.25 humidity 70.0 4320 > th dose independent rect. 9 5
630 130.26 wind 9.0 14400 > th dose independent rect. 9 1
638 130.27 humidity 80.0 14400 > th dose dependent rect. 15 1
652 130.30 wind 9.0 14400 < th dose independent rect. 6 4
655 130.31 wind 1.0 43200 > th dose dependent rect. 22 2
659 130.32 wind 9.0 43200 < th dose independent rect. 1 1
660 130.32 radiation 1.0 4320 > th dose independent rect. 4 4
667 130.32 radiation 1.0 4320 < th dose independent rect. 22 10
672 130.32 wind 9.0 43200 < th dose dependent rect. 22 2
677 130.32 humidity 80.0 14400 > th dose dependent rect. 13 4
679 130.32 humidity 70.0 43200 > th dose dependent rect. 7 6
680 130.33 wind 5.0 43200 > th dose independent rect. 2 1
683 130.33 radiation 20.0 4320 < th dose independent rect. 2 5
684 130.33 radiation 1.0 4320 < th dose independent rect. 3 5
693 130.33 wind 9.0 43200 > th dose dependent rect. 1 1
712 130.35 temperature 30.0 10 < th dose independent sin 14 NA
720 130.36 wind 5.0 43200 < th dose independent rect. 2 1
721 130.36 humidity 90.0 14400 < th dose independent rect. 16 1
727 130.36 humidity 80.0 14400 > th dose dependent rect. 13 1
734 130.37 wind 3.0 43200 > th dose independent rect. 1 3
741 130.37 wind 3.0 43200 > th dose independent rect. 22 6
754 130.37 radiation 20.0 4320 < th dose independent rect. 17 14
764 130.38 wind 9.0 270 > th dose independent rect. 12 6
770 130.39 wind 9.0 14400 < th dose independent rect. 9 1
785 130.40 wind 3.0 43200 < th dose independent rect. 22 6
797 130.41 wind 9.0 43200 > th dose independent rect. 1 1
798 130.41 wind 5.0 43200 > th dose independent rect. 8 1
800 130.41 atmosphere 1015.0 14400 < th dose independent rect. 18 1
812 130.42 temperature 10.0 30 > th dose independent rect. 18 1
814 130.42 humidity 50.0 30 > th dose independent rect. 18 1
816 130.42 atmosphere 1010.0 30 < th dose independent rect. 18 1
818 130.42 radiation 20.0 30 < th dose independent rect. 18 1
821 130.42 precipitation 0.1 30 < th dose independent rect. 18 1
823 130.42 temperature 10.0 30 > th dose independent rect. 19 23
824 130.42 precipitation 0.1 30 < th dose dependent rect. 18 1
839 130.43 temperature 15.0 14400 > th dose independent rect. 14 1
840 130.43 humidity 90.0 14400 > th dose independent rect. 16 1
841 130.43 humidity 70.0 4320 < th dose independent rect. 10 1
843 130.43 wind 3.0 43200 < th dose independent rect. 1 3
852 130.43 wind 9.0 270 > th dose dependent rect. 16 7
869 130.44 wind 5.0 43200 < th dose independent rect. 8 1
888 130.45 humidity 70.0 4320 < th dose independent rect. 10 4
903 130.46 temperature 10.0 43200 > th dose independent rect. 7 1
939 130.48 temperature 30.0 30 < th dose independent sin 16 NA
944 130.48 wind 1.0 30 < th dose independent rect. 3 2
950 130.48 temperature 30.0 10 > th dose independent rect. 18 21
951 130.48 wind 1.0 43200 > th dose dependent rect. 7 1
952 130.48 wind 9.0 43200 < th dose dependent rect. 7 1
962 130.48 wind 7.0 43200 < th dose dependent rect. 1 7
977 130.49 humidity 90.0 14400 > th dose independent rect. 14 4
995 130.49 wind 1.0 43200 > th dose dependent rect. 1 7