FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0523500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.51 (0.207) R2 : 0.0822
β1 : 4.65 (1.23) R2dD : 1.54 R2D : -2.88
β2 : -- (--) R2dC : -- R2C : --
β3 : -76.7 (18.4) R2dE : 75.7 R2E : -77.7
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 468 (111) R2dD*E : 78.1 R2D*E : -75.6
γ1 : 0.234 (0.1) R2dN8 : 0.0151 R2N8 : -0.855
σ : 0.875
deviance : 353.29
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 994.7
memory length : 675
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
341.49 0.868 2.42 5.09 0.444 -76 0.811 465 0.235 8.14 994.9 677 -- --
359.3 0.89 3.35 -0.502 0.442 -0.487 0.884 -- 0.221 7.73 994.9 677 -- --
343.24 0.863 2.43 5.1 0.439 -76.2 -- 466 0.225 8.51 994.9 673 -- --
360.98 0.891 3.35 -0.472 0.436 -0.624 -- -- 0.22 8.18 995.6 152 -- --
353.29 0.875 2.51 4.65 -- -76.7 -- 468 0.234 -- 994.7 675 -- --
359.54 0.889 3.35 -0.505 0.446 -- 0.903 -- 0.223 7.69 -- -- -- --
361.73 0.891 3.35 -0.48 0.445 -- -- -- 0.223 8.09 -- -- -- --
371.24 0.897 3.37 -0.464 -- -0.767 -- -- 0.223 -- 995.4 303 -- --
366.84 0.897 3.34 -- 0.433 -0.71 -- -- 0.272 8.28 995.6 265 -- --
372.58 0.902 3.37 -0.476 -- -- -- -- 0.228 -- -- -- -- --
367.81 0.897 3.34 -- 0.442 -- -- -- 0.276 8.17 -- -- -- --
376.92 0.904 3.35 -- -- -0.876 -- -- 0.272 -- 995.6 277 -- --
378.56 0.908 3.35 -- -- -- -- -- 0.281 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 336.65 temperature 25 90 > th dose independent rect. 1 1
2 337.28 temperature 25 90 > th dose dependent rect. 1 1
3 337.52 temperature 25 720 > th dose dependent rect. 22 2
6 338.79 temperature 25 720 > th dose dependent rect. 20 6
18 339.37 temperature 25 10 > th dose dependent rect. 1 5
25 339.91 atmosphere 1000 10 < th dose independent rect. 1 1
32 339.91 atmosphere 1000 10 < th dose dependent rect. 1 1
48 340.26 atmosphere 995 720 < th dose independent rect. 14 1
89 340.26 atmosphere 995 720 < th dose dependent rect. 14 1
137 340.68 temperature 25 4320 > th dose dependent rect. 18 15
146 340.90 atmosphere 995 720 < th dose independent sin 6 NA
160 341.51 temperature 25 4320 > th dose dependent rect. 18 10
164 341.56 atmosphere 995 720 < th dose dependent sin 7 NA
172 341.80 wind 9 1440 < th dose independent rect. 7 3
192 342.23 temperature 25 4320 > th dose dependent rect. 19 1
244 342.91 temperature 25 4320 > th dose dependent sin 10 NA
253 343.17 atmosphere 995 1440 > th dose independent rect. 11 16
264 343.31 atmosphere 1000 90 < th dose dependent rect. 24 14
265 343.32 temperature 25 4320 > th dose independent rect. 19 14
282 343.63 atmosphere 995 720 > th dose independent sin 22 NA
314 343.96 temperature 25 4320 < th dose independent rect. 19 14
351 344.19 radiation 40 90 < th dose independent rect. 6 10
355 344.25 atmosphere 995 1440 > th dose independent rect. 11 14
386 344.53 temperature 25 4320 > th dose independent rect. 18 10
392 344.58 wind 1 10 < th dose dependent rect. 24 5
393 344.59 humidity 90 90 < th dose independent rect. 2 6
431 344.86 atmosphere 995 720 > th dose independent no NA NA
455 344.88 wind 1 270 < th dose dependent rect. 15 10
458 344.91 wind 1 270 < th dose dependent rect. 20 5
463 344.96 wind 1 270 < th dose dependent rect. 17 8
470 345.00 temperature 25 4320 > th dose independent rect. 24 9
483 345.06 temperature 25 4320 < th dose independent rect. 18 10
487 345.09 temperature 25 4320 < th dose independent rect. 18 8
490 345.11 temperature 25 4320 > th dose independent sin 10 NA
491 345.11 atmosphere 995 1440 > th dose independent rect. 11 7
498 345.14 temperature 25 4320 > th dose independent rect. 19 1
505 345.20 temperature 25 720 > th dose independent rect. 20 6
516 345.24 temperature 25 4320 < th dose independent rect. 19 1
527 345.31 atmosphere 995 1440 > th dose independent rect. 11 9
528 345.31 atmosphere 995 1440 > th dose independent rect. 15 23
531 345.33 atmosphere 1000 30 < th dose dependent rect. 9 1
559 345.47 temperature 25 720 > th dose independent rect. 20 4
560 345.48 atmosphere 995 720 < th dose independent no NA NA
760 345.50 temperature 25 4320 > th dose independent rect. 19 3
789 345.61 temperature 25 4320 < th dose independent sin 10 NA
799 345.66 radiation 1 10 > th dose independent rect. 6 3
809 345.69 temperature 25 4320 > th dose dependent rect. 5 4
848 345.76 wind 1 10 < th dose dependent rect. 4 1
856 345.80 temperature 25 4320 > th dose dependent rect. 7 1
874 345.87 radiation 20 90 < th dose independent rect. 6 10
877 345.88 wind 1 10 < th dose dependent rect. 13 16
880 345.90 temperature 25 10 > th dose independent rect. 1 5
886 345.92 wind 1 10 < th dose dependent rect. 21 8
899 345.95 atmosphere 995 720 < th dose dependent no NA NA