Os01g0523200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os01g0523200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.23 | 0.477 | 12.5 | 2.44 | 0.965 | 3.04 | 0.532 | -1.46 | 0.303 | 16.8 | 30.78 | 314 | -- | -- |
| 104.65 | 0.476 | 12.5 | 2.26 | 0.985 | 3.07 | 0.805 | -- | 0.247 | 17 | 30.46 | 343 | -- | -- |
| 103.6 | 0.474 | 12.5 | 2.47 | 0.965 | 3.02 | -- | -1.69 | 0.312 | 17.1 | 30.77 | 342 | -- | -- |
| 106.29 | 0.48 | 12.5 | 2.18 | 0.946 | 2.98 | -- | -- | 0.257 | 17.1 | 29.94 | 355 | -- | -- |
| 107.97 | 0.484 | 12.5 | 2.67 | -- | 2.6 | -- | -1.78 | 0.252 | -- | 44.67 | 1666 | -- | -- |
| 219.98 | 0.695 | 12.6 | 1.44 | 0.0732 | -- | 0.554 | -- | -0.329 | 14.5 | -- | -- | -- | -- |
| 221.07 | 0.696 | 12.6 | 1.46 | 0.0768 | -- | -- | -- | -0.325 | 15.1 | -- | -- | -- | -- |
| 106.1 | 0.48 | 12.5 | 2.3 | -- | 2.57 | -- | -- | 0.272 | -- | 26.97 | 1801 | -- | -- |
| 222.61 | 0.695 | 12.6 | -- | 0.654 | 1.97 | -- | -- | -0.19 | 15.3 | 31.08 | 157 | -- | -- |
| 221.4 | 0.695 | 12.6 | 1.45 | -- | -- | -- | -- | -0.327 | -- | -- | -- | -- | -- |
| 276.99 | 0.779 | 12.7 | -- | 0.0481 | -- | -- | -- | -0.487 | 15.1 | -- | -- | -- | -- |
| 227.53 | 0.703 | 12.6 | -- | -- | 1.6 | -- | -- | -0.207 | -- | 30.9 | 1499 | -- | -- |
| 277.13 | 0.777 | 12.7 | -- | -- | -- | -- | -- | -0.488 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 13 |
| 2 | 101.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 13 |
| 6 | 101.78 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 15 | 101.90 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 264 | 104.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 4 |
| 268 | 104.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 4 |
| 338 | 104.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 393 | 104.67 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 528 | 105.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 734 | 105.90 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 742 | 105.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 743 | 105.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 766 | 106.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 990 | 106.64 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |